View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17309_low_4 (Length: 465)

Name: NF17309_low_4
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17309_low_4
NF17309_low_4
[»] chr4 (10 HSPs)
chr4 (183-388)||(56563055-56563260)
chr4 (184-311)||(53010974-53011101)
chr4 (306-436)||(53008256-53008386)
chr4 (327-436)||(53011169-53011278)
chr4 (332-434)||(16853976-16854078)
chr4 (342-447)||(5715318-5715423)
chr4 (327-447)||(50935665-50935780)
chr4 (307-447)||(50911862-50911998)
chr4 (275-311)||(53008159-53008195)
chr4 (275-307)||(16854128-16854160)
[»] chr5 (11 HSPs)
chr5 (157-314)||(9503466-9503623)
chr5 (183-318)||(9507471-9507606)
chr5 (310-447)||(9507626-9507763)
chr5 (307-447)||(9503641-9503781)
chr5 (21-163)||(9503301-9503444)
chr5 (310-447)||(32090199-32090336)
chr5 (327-447)||(34854063-34854188)
chr5 (337-447)||(3627510-3627620)
chr5 (210-302)||(28872330-28872422)
chr5 (401-447)||(690121-690167)
chr5 (327-396)||(690061-690129)
[»] chr2 (16 HSPs)
chr2 (275-444)||(21794494-21794663)
chr2 (183-311)||(5989243-5989371)
chr2 (183-311)||(45485963-45486091)
chr2 (307-447)||(45485789-45485929)
chr2 (324-447)||(18163940-18164063)
chr2 (324-447)||(302387-302509)
chr2 (306-447)||(295733-295874)
chr2 (307-447)||(43081638-43081778)
chr2 (345-447)||(39190651-39190753)
chr2 (327-396)||(29960364-29960433)
chr2 (332-396)||(13273316-13273380)
chr2 (275-318)||(43081809-43081852)
chr2 (275-311)||(5983380-5983416)
chr2 (275-311)||(13273211-13273247)
chr2 (275-311)||(18163796-18163832)
chr2 (401-447)||(29960425-29960471)
[»] chr3 (13 HSPs)
chr3 (183-311)||(32813384-32813512)
chr3 (187-302)||(27237112-27237227)
chr3 (307-447)||(531531-531671)
chr3 (307-440)||(4315552-4315685)
chr3 (324-447)||(28920274-28920397)
chr3 (327-421)||(32813598-32813692)
chr3 (367-447)||(47743868-47743948)
chr3 (307-377)||(55418408-55418478)
chr3 (275-318)||(531688-531731)
chr3 (275-316)||(55418362-55418403)
chr3 (275-311)||(4315482-4315518)
chr3 (275-311)||(32813091-32813127)
chr3 (280-311)||(11171985-11172016)
[»] chr7 (6 HSPs)
chr7 (309-447)||(22582339-22582480)
chr7 (307-439)||(45937828-45937960)
chr7 (324-436)||(297081-297193)
chr7 (327-444)||(293191-293308)
chr7 (275-307)||(22582548-22582580)
chr7 (275-311)||(35324170-35324206)
[»] chr8 (6 HSPs)
chr8 (307-447)||(37186792-37186932)
chr8 (324-447)||(11096136-11096257)
chr8 (327-447)||(37786585-37786705)
chr8 (306-421)||(37791182-37791296)
chr8 (275-308)||(14685248-14685281)
chr8 (275-318)||(11096073-11096116)
[»] scaffold0038 (1 HSPs)
scaffold0038 (324-447)||(49388-49511)
[»] chr6 (5 HSPs)
chr6 (275-447)||(7501370-7501560)
chr6 (324-447)||(28249226-28249349)
chr6 (307-447)||(31888483-31888623)
chr6 (228-302)||(367474-367548)
chr6 (274-311)||(31888329-31888366)
[»] chr1 (2 HSPs)
chr1 (324-447)||(44541363-44541486)
chr1 (205-278)||(28451021-28451093)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 183 - 388
Target Start/End: Original strand, 56563055 - 56563260
Alignment:
Q  183 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtt 282  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  56563055 gctcacaaagccattgaagctaagcagctttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaagtgtattggtt 56563154  T
Q  283 tagtaattcagtttagttagttttagcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaagg 382  Q
    || |||||||||||||||||||||||||| |||||| ||  |||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||    
T  56563155 taataattcagtttagttagttttagcttatgaagtgcagcttctgatgtcttcagaagcagagtctactaacaaaccttggttagcgtgttaaccaagg 56563254  T
Q  383 tagtta 388  Q
    ||||||    
T  56563255 tagtta 56563260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 184 - 311
Target Start/End: Original strand, 53010974 - 53011101
Alignment:
Q  184 ctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggttt 283  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53010974 ctcacaaagccattgaagctaagcagctttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggttt 53011073  T
Q  284 agtaattcagtttagttagttttagctt 311  Q
    ||||||||||||||||||||||||||||    
T  53011074 agtaattcagtttagttagttttagctt 53011101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 306 - 436
Target Start/End: Original strand, 53008256 - 53008386
Alignment:
Q  306 tagcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 405  Q
    ||||||||||||||||  |||||||||||| |||||||||||||||||| |||| ||||||||||| ||||||||  |||||||||||||||||||||||    
T  53008256 tagcttctgaagtacagcttctgatgtcttcagaagcagagtctagtaacaaacattggttagcgtattaaccaaactagttagtttgttagaggagttt 53008355  T
Q  406 gttacaatgtccagttatatatatactcact 436  Q
    ||||||| |||||||| ||||||||||||||    
T  53008356 gttacaacgtccagttgtatatatactcact 53008386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 327 - 436
Target Start/End: Original strand, 53011169 - 53011278
Alignment:
Q  327 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatata 426  Q
    ||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||    
T  53011169 tgatgtcttcagaagcagagtctagtaacaaacattggttagcgtgttaaccaaggtagttagtttgttagaggattttgttaaaacgtccagttgtata 53011268  T
Q  427 tatactcact 436  Q
    ||||||||||    
T  53011269 tatactcact 53011278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 332 - 434
Target Start/End: Complemental strand, 16854078 - 16853976
Alignment:
Q  332 tctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatac 431  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||| |||||||||    
T  16854078 tcttcagaagcagagtctagtaacaaaccttggttagcgtgttaaccaacgtagttagtttgttagaggaatttgttacaacgtccagttgtatatatac 16853979  T
Q  432 tca 434  Q
    |||    
T  16853978 tca 16853976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 342 - 447
Target Start/End: Original strand, 5715318 - 5715423
Alignment:
Q  342 cagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatactcactcatgt 441  Q
    ||||||||||||| ||||||||||||||||||||||||   || ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  5715318 cagagtctagtaacaaaccttggttagcgtgttaaccagaataattagtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgt 5715417  T
Q  442 gttgta 447  Q
    ||||||    
T  5715418 gttgta 5715423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 327 - 447
Target Start/End: Original strand, 50935665 - 50935780
Alignment:
Q  327 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatata 426  Q
    ||||||||| |||||  ||||||||||| |||| |||||||||||||||||||||||||||||||    |||||||||||||||||  || |||| ||||    
T  50935665 tgatgtcttcagaagttgagtctagtaacaaac-ttggttagcgtgttaaccaaggtagttagtt----agaggagtttgttacaacatctagttgtata 50935759  T
Q  427 tatactcactcatgtgttgta 447  Q
    |||||||||||||||||||||    
T  50935760 tatactcactcatgtgttgta 50935780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 307 - 447
Target Start/End: Original strand, 50911862 - 50911998
Alignment:
Q  307 agcttctgaagtacaatttctgatgtctttagaagca-gagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 405  Q
    ||||||||| || ||  |||||||||||| ||||||  ||||||||||| |||| ||||||||||| |||||||||||||||||||    ||||||||||    
T  50911862 agcttctgatgtgcagattctgatgtcttcagaagcttgagtctagtaacaaac-ttggttagcgtattaaccaaggtagttagtt----agaggagttt 50911956  T
Q  406 gttacaatgtccagttatatatatactcactcatgtgttgta 447  Q
    |||||||   |||||| |||||||||||||||||||||||||    
T  50911957 gttacaacacccagttgtatatatactcactcatgtgttgta 50911998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 53008159 - 53008195
Alignment:
Q  275 tattggtttagtaattcagtttagttagttttagctt 311  Q
    |||||||||||||||||||||||||||||||||||||    
T  53008159 tattggtttagtaattcagtttagttagttttagctt 53008195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 16854160 - 16854128
Alignment:
Q  275 tattggtttagtaattcagtttagttagtttta 307  Q
    ||||||||||||||||||||||| |||||||||    
T  16854160 tattggtttagtaattcagtttaattagtttta 16854128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 157 - 314
Target Start/End: Original strand, 9503466 - 9503623
Alignment:
Q  157 ttctgaaatacaatttctgaagtatagctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaact 256  Q
    ||||||| ||||  |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9503466 ttctgaagtacatcttctgaagtacagctcacaaagccattaaagctaagcagctttgattacttgaagaagaagttaggaatggctgaagcatctaact 9503565  T
Q  257 aaatgaattaaggaggtgtattggtttagtaattcagtttagttagttttagcttctg 314  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9503566 aaatgaattaaggaggtgtattggtttagtaattcaatttagttagttttagcttctg 9503623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 183 - 318
Target Start/End: Original strand, 9507471 - 9507606
Alignment:
Q  183 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtt 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9507471 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggttgaagcatctaactaaatgaattaaggaggtgtattggtt 9507570  T
Q  283 tagtaattcagtttagttagttttagcttctgaagt 318  Q
    |||||||||| |||||||||||||||||||||||||    
T  9507571 tagtaattcaatttagttagttttagcttctgaagt 9507606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 310 - 447
Target Start/End: Original strand, 9507626 - 9507763
Alignment:
Q  310 ttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgtta 409  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9507626 ttctgaagtacaacttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttaaaggagtttgtta 9507725  T
Q  410 caatgtccagttatatatatactcactcatgtgttgta 447  Q
    ||| |||||||||||||||||| |||||||||||||||    
T  9507726 caacgtccagttatatatatacccactcatgtgttgta 9507763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 307 - 447
Target Start/End: Original strand, 9503641 - 9503781
Alignment:
Q  307 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 406  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||    
T  9503641 agcttctgaagtacaatttctgaagtcttcagaagcagagtctagtaataaactttggttagcgtgttaatcaagatagttagtttgttagaggagtttg 9503740  T
Q  407 ttacaatgtccagttatatatatactcactcatgtgttgta 447  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  9503741 ttacaacgtccagttatatatatactcactcatgtgttgta 9503781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 9503301 - 9503444
Alignment:
Q  21 tcattacaagtatcacatgtctagtcaataatcacacgaggatactcatcaaattagttaatagttatgtaaatgtccattacagt-ggaggatatgtgg 119  Q
    |||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  9503301 tcatcacaagtattacatgtctagtcaataatcatacgaggatactcatcaaattagttaatagttatgtaaatgtccattatagtgggaggatatgtgg 9503400  T
Q  120 gggcatgactcatgagtacagtttagttagttttaacttctgaa 163  Q
    |||||||||||||||||||| ||||||||||||||  |||||||    
T  9503401 gggcatgactcatgagtacaatttagttagttttagtttctgaa 9503444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 310 - 447
Target Start/End: Original strand, 32090199 - 32090336
Alignment:
Q  310 ttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgtta 409  Q
    ||||||||||||  |||||||||||| ||||| ||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  32090199 ttctgaagtacagcttctgatgtcttcagaagtagaatctagtaacaaacctcggttagcgtgttaaccaatgtagttagtttgttagaggagtttgtta 32090298  T
Q  410 caatgtccagttatatatatactcactcatgtgttgta 447  Q
    ||| |||||||| |||||||||||||||||||||||||    
T  32090299 caacgtccagttgtatatatactcactcatgtgttgta 32090336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 327 - 447
Target Start/End: Original strand, 34854063 - 34854188
Alignment:
Q  327 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagtta---- 422  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||         
T  34854063 tgatgtcttcagaagcagagtctagtaataaactttggttagcgtgttaaccaaggtagttaatttgttagaggagtttgttacaacgtccagttcagtt 34854162  T
Q  423 -tatatatactcactcatgtgttgta 447  Q
     |||||||||||||||||||||||||    
T  34854163 gtatatatactcactcatgtgttgta 34854188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 337 - 447
Target Start/End: Original strand, 3627510 - 3627620
Alignment:
Q  337 agaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatactcact 436  Q
    |||||||||||||||||  ||| ||||||||||||||||||||| ||||||||||| |||||| |||||||||||| |||||| | ||||||||||||||    
T  3627510 agaagcagagtctagtagcaaatcttggttagcgtgttaaccaatgtagttagtttattagagaagtttgttacaacgtccagatgtatatatactcact 3627609  T
Q  437 catgtgttgta 447  Q
    |||||||||||    
T  3627610 catgtgttgta 3627620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 210 - 302
Target Start/End: Complemental strand, 28872422 - 28872330
Alignment:
Q  210 ctttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtttagtaattcagtttagttag 302  Q
    ||||||||||||||| | |||||| |||||||||||||||||||||||||| |||||||| |||||| ||| ||||||||||| |||| ||||    
T  28872422 ctttgattacttgaaaatgaagttgggaatggctgaagcatctaactaaataaattaaggtggtgtactggattagtaattcattttatttag 28872330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 401 - 447
Target Start/End: Original strand, 690121 - 690167
Alignment:
Q  401 agtttgttacaatgtccagttatatatatactcactcatgtgttgta 447  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  690121 agtttgttacaatgttcagttgtatatatactcactcatgtgttgta 690167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 396
Target Start/End: Original strand, 690061 - 690129
Alignment:
Q  327 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgtta 396  Q
    ||||||||| ||||| ||||| ||||||  || ||||||||||||||||| || ||||||||||||||||    
T  690061 tgatgtcttcagaagtagagtttagtaaccaatcttggttagcgtgttaa-cagggtagttagtttgtta 690129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 8e-65; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 275 - 444
Target Start/End: Complemental strand, 21794663 - 21794494
Alignment:
Q  275 tattggtttagtaattcagtttagttagttttagcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgtt 374  Q
    ||||||||||||| ||||||||||||||||||||||||||| || ||  |||||||||||| |||||||||||||||||| ||||| |||||||||||||    
T  21794663 tattggtttagtagttcagtttagttagttttagcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaacaaaccatggttagcgtgtt 21794564  T
Q  375 aaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatactcactcatgtgtt 444  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||    
T  21794563 aaccaaggtagttagtttgttagaggagtttgttacaacgtccagttgtatatatacttactcatgtgtt 21794494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 183 - 311
Target Start/End: Original strand, 5989243 - 5989371
Alignment:
Q  183 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtt 282  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5989243 gctcacaaagccattgaagctaagcagctttgattacttgaagaagaagttaggaatggctgaagcatctaagtaaatgaattaaggaggtgtattggtt 5989342  T
Q  283 tagtaattcagtttagttagttttagctt 311  Q
    |||||||||||||||||||||||||||||    
T  5989343 tagtaattcagtttagttagttttagctt 5989371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 183 - 311
Target Start/End: Complemental strand, 45486091 - 45485963
Alignment:
Q  183 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtt 282  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  45486091 gctcacaaagccattgaagctaagtagctttgattacttgaagaagaagttaggaatggttgaagcatctaactaaatgaattaaggaggtgtatttgtt 45485992  T
Q  283 tagtaattcagtttagttagttttagctt 311  Q
    |||||||||||||||||||||||||||||    
T  45485991 tagtaattcagtttagttagttttagctt 45485963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 307 - 447
Target Start/End: Complemental strand, 45485929 - 45485789
Alignment:
Q  307 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 406  Q
    |||||||||||| ||  |||||||||||| |||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45485929 agcttctgaagtgcagcttctgatgtcttcagaaacagagtctagcaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 45485830  T
Q  407 ttacaatgtccagttatatatatactcactcatgtgttgta 447  Q
    |||||| |||||||| |||||||||||||||||||||||||    
T  45485829 ttacaacgtccagttgtatatatactcactcatgtgttgta 45485789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 324 - 447
Target Start/End: Original strand, 18163940 - 18164063
Alignment:
Q  324 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 423  Q
    |||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  18163940 ttctgatgtctttagaagtagagtctagtaataaccattggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaacgtccagttgt 18164039  T
Q  424 atatatactcactcatgtgttgta 447  Q
    ||||||||||||||| ||||||||    
T  18164040 atatatactcactcaagtgttgta 18164063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 324 - 447
Target Start/End: Original strand, 302387 - 302509
Alignment:
Q  324 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 423  Q
    |||||||||||| ||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  302387 ttctgatgtcttcagaagcagagtctagtaaccaaccttggttagcgtgttaaccagggtagttagtttgttagaggagtttgttacaatgtccagttgt 302486  T
Q  424 atatatactcactcatgtgttgta 447  Q
    ||||||||||||| ||||||||||    
T  302487 atatatactcact-atgtgttgta 302509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 306 - 447
Target Start/End: Original strand, 295733 - 295874
Alignment:
Q  306 tagcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 405  Q
    |||||||||| || ||  |||||||||||| ||||||||||||||||||  ||||||| |||| |||||||||| | |||||||||||||||||||||||    
T  295733 tagcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaaccaaccttgattagtgtgttaaccaggatagttagtttgttagaggagttt 295832  T
Q  406 gttacaatgtccagttatatatatactcactcatgtgttgta 447  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  295833 gttacaatgtccagttgtatatatactcactcatgtgttgta 295874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 307 - 447
Target Start/End: Complemental strand, 43081778 - 43081638
Alignment:
Q  307 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 406  Q
    ||||||||| || ||  |||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||| |||||||||    
T  43081778 agcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaataaacattggttagcatgttaacgaaggtagttagtttgttataggagtttg 43081679  T
Q  407 ttacaatgtccagttatatatatactcactcatgtgttgta 447  Q
    |||||| ||||| || ||||| |||||||||||||||||||    
T  43081678 ttacaacgtccaattgtatatgtactcactcatgtgttgta 43081638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 345 - 447
Target Start/End: Complemental strand, 39190753 - 39190651
Alignment:
Q  345 agtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatactcactcatgtgtt 444  Q
    |||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||    
T  39190753 agtctagtaacaaactttggttagcatgttaaccaaggtagttagtttgttagaggagtttgttacaacgtctagttgtatatatactcactcatgtgtt 39190654  T
Q  445 gta 447  Q
    |||    
T  39190653 gta 39190651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 327 - 396
Target Start/End: Original strand, 29960364 - 29960433
Alignment:
Q  327 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgtta 396  Q
    ||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29960364 tgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgtta 29960433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 332 - 396
Target Start/End: Original strand, 13273316 - 13273380
Alignment:
Q  332 tctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgtta 396  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13273316 tcttcagaagcagagtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgtta 13273380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 318
Target Start/End: Complemental strand, 43081852 - 43081809
Alignment:
Q  275 tattggtttagtaattcagtttagttagttttagcttctgaagt 318  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  43081852 tattagtttagtaattcagtttagttagttttagcttctgaagt 43081809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 5983380 - 5983416
Alignment:
Q  275 tattggtttagtaattcagtttagttagttttagctt 311  Q
    |||||||||||||||||||||||||||||||||||||    
T  5983380 tattggtttagtaattcagtttagttagttttagctt 5983416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 13273211 - 13273247
Alignment:
Q  275 tattggtttagtaattcagtttagttagttttagctt 311  Q
    |||||||||||||||||||||||||||||||||||||    
T  13273211 tattggtttagtaattcagtttagttagttttagctt 13273247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 18163796 - 18163832
Alignment:
Q  275 tattggtttagtaattcagtttagttagttttagctt 311  Q
    |||||||||||||||||||||||||||||||||||||    
T  18163796 tattggtttagtaattcagtttagttagttttagctt 18163832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 447
Target Start/End: Original strand, 29960425 - 29960471
Alignment:
Q  401 agtttgttacaatgtccagttatatatatactcactcatgtgttgta 447  Q
    |||||||||||| ||| |||| |||||||||||||| ||||||||||    
T  29960425 agtttgttacaacgtctagttgtatatatactcacttatgtgttgta 29960471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 5e-57; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 183 - 311
Target Start/End: Original strand, 32813384 - 32813512
Alignment:
Q  183 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtt 282  Q
    |||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32813384 gctcgcaaagccattgaagctaagcagctttgattacttgaagaagaagttaggaatggttgaagcatctaactaaatgaattaaggaggtgtattggtt 32813483  T
Q  283 tagtaattcagtttagttagttttagctt 311  Q
    |||||||||||||||||||||||||||||    
T  32813484 tagtaattcagtttagttagttttagctt 32813512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 187 - 302
Target Start/End: Original strand, 27237112 - 27237227
Alignment:
Q  187 acaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtttagt 286  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27237112 acaaagccattgaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattagtttagt 27237211  T
Q  287 aattcagtttagttag 302  Q
    ||||||||||||||||    
T  27237212 aattcagtttagttag 27237227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 307 - 447
Target Start/End: Complemental strand, 531671 - 531531
Alignment:
Q  307 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 406  Q
    |||||||||  | ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  531671 agcttctgatatgcaacttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaacaaaggtagttagttttttagaggagtttg 531572  T
Q  407 ttacaatgtccagttatatatatactcactcatgtgttgta 447  Q
    |||||| |||||||| |||||||||||||||||||||||||    
T  531571 ttacaacgtccagttgtatatatactcactcatgtgttgta 531531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 307 - 440
Target Start/End: Original strand, 4315552 - 4315685
Alignment:
Q  307 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 406  Q
    |||||||||||| ||  |||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4315552 agcttctgaagtgcagcttctgatggcttcagaagcagagtctagtaacaaacgttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 4315651  T
Q  407 ttacaatgtccagttatatatatactcactcatg 440  Q
    |||||| |||||||| ||||||||||||||||||    
T  4315652 ttacaacgtccagttgtatatatactcactcatg 4315685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 324 - 447
Target Start/End: Complemental strand, 28920397 - 28920274
Alignment:
Q  324 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 423  Q
    |||||||||||| ||||||| ||||||||||| || |||||||||| ||||||||| |||||||||||| |||||||||||||||| || |||||||| |    
T  28920397 ttctgatgtcttcagaagcatagtctagtaatcaatcttggttagcatgttaaccagggtagttagtttattagaggagtttgttataacgtccagttgt 28920298  T
Q  424 atatatactcactcatgtgttgta 447  Q
    |||||||||||||||| |||||||    
T  28920297 atatatactcactcatatgttgta 28920274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 327 - 421
Target Start/End: Original strand, 32813598 - 32813692
Alignment:
Q  327 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagtt 421  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  32813598 tgatgtctttagaagcagaatctagtaacaaaccttggttagcgtgttaacgaaggtagttagtttgttagaggagtttgttacaacgtccagtt 32813692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 367 - 447
Target Start/End: Original strand, 47743868 - 47743948
Alignment:
Q  367 agcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatactcactcatgtgttgta 447  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| || ||||| ||||||||||||||||    
T  47743868 agcgtgttaaccaaggtagttagtttgttacaggagtttgttacaacgtctagttgtaaatatattcactcatgtgttgta 47743948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 55418408 - 55418478
Alignment:
Q  307 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaac 377  Q
    ||||||| ||| |||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  55418408 agcttctaaagaacagcttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaac 55418478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 318
Target Start/End: Complemental strand, 531731 - 531688
Alignment:
Q  275 tattggtttagtaattcagtttagttagttttagcttctgaagt 318  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  531731 tattggtttagtaattcagtatagttagttttagcttctgaagt 531688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 55418362 - 55418403
Alignment:
Q  275 tattggtttagtaattcagtttagttagttttagcttctgaa 316  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  55418362 tattggtttagtaatttagtttagttagttttagcttctgaa 55418403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 4315482 - 4315518
Alignment:
Q  275 tattggtttagtaattcagtttagttagttttagctt 311  Q
    |||||||||||||||||||||||||||||||||||||    
T  4315482 tattggtttagtaattcagtttagttagttttagctt 4315518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 32813091 - 32813127
Alignment:
Q  275 tattggtttagtaattcagtttagttagttttagctt 311  Q
    |||| ||||||||||||||||||||||||||||||||    
T  32813091 tattagtttagtaattcagtttagttagttttagctt 32813127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 311
Target Start/End: Original strand, 11171985 - 11172016
Alignment:
Q  280 gtttagtaattcagtttagttagttttagctt 311  Q
    ||||||||||||||||||||||||||||||||    
T  11171985 gtttagtaattcagtttagttagttttagctt 11172016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 309 - 447
Target Start/End: Complemental strand, 22582480 - 22582339
Alignment:
Q  309 cttctgaagtacaatttctgatgtctttagaagcag---agtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 405  Q
    |||||||||||||| |||||||||||| | ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22582480 cttctgaagtacaacttctgatgtcttcaaaagcagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 22582381  T
Q  406 gttacaatgtccagttatatatatactcactcatgtgttgta 447  Q
    | ||||| |||||||| |||||||||||||||||||||||||    
T  22582380 ggtacaacgtccagttgtatatatactcactcatgtgttgta 22582339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 307 - 439
Target Start/End: Original strand, 45937828 - 45937960
Alignment:
Q  307 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 406  Q
    |||||||||||| ||  || ||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45937828 agcttctgaagtgcagcttttgatgtcttcaaaagcagggtctagtaataaaccttggttagcgtgttaaccaaggtagttagttagttagaggagtttg 45937927  T
Q  407 ttacaatgtccagttatatatatactcactcat 439  Q
    |||||| |||||||| |||||||||||||||||    
T  45937928 ttacaacgtccagttgtatatatactcactcat 45937960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 324 - 436
Target Start/End: Original strand, 297081 - 297193
Alignment:
Q  324 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 423  Q
    |||||||||||| |||| | |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |    
T  297081 ttctgatgtcttcagaaactgagtttagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaacgtctagttgt 297180  T
Q  424 atatatactcact 436  Q
    |||||||||||||    
T  297181 atatatactcact 297193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 327 - 444
Target Start/End: Original strand, 293191 - 293308
Alignment:
Q  327 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatata 426  Q
    ||||||||| |||| | |||| |||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||    
T  293191 tgatgtcttcagaaactgagtttagtaacaaacattggttagcgtgttaaccaaggtagttagtttgttagaggggtttgttacaacgtctagttgtata 293290  T
Q  427 tatactcactcatgtgtt 444  Q
    ||||||||||||| ||||    
T  293291 tatactcactcatatgtt 293308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 22582580 - 22582548
Alignment:
Q  275 tattggtttagtaattcagtttagttagtttta 307  Q
    |||||||||||||||||||||||||||||||||    
T  22582580 tattggtttagtaattcagtttagttagtttta 22582548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 35324206 - 35324170
Alignment:
Q  275 tattggtttagtaattcagtttagttagttttagctt 311  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  35324206 tattggtttagtatttcagtttagttaattttagctt 35324170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 307 - 447
Target Start/End: Complemental strand, 37186932 - 37186792
Alignment:
Q  307 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 406  Q
    |||||||||||| ||  |||||||||||||||||||||||||||||||||||| |||| ||  |||||||||| ||||||||||||||||||||||||||    
T  37186932 agcttctgaagtgcagcttctgatgtctttagaagcagagtctagtaataaacattggctatagtgttaaccagggtagttagtttgttagaggagtttg 37186833  T
Q  407 ttacaatgtccagttatatatatactcactcatgtgttgta 447  Q
    |||||| ||| |||| |||||||||||||||||||||||||    
T  37186832 ttacaacgtctagttgtatatatactcactcatgtgttgta 37186792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 324 - 447
Target Start/End: Original strand, 11096136 - 11096257
Alignment:
Q  324 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 423  Q
    |||||||||||| |||||  ||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |    
T  11096136 ttctgatgtcttcagaag--gagtctagtaacaaactttggttagcgtgttaatcaaggtagttagtttgttagaggagtttgttacaacgttcagttgt 11096233  T
Q  424 atatatactcactcatgtgttgta 447  Q
    ||||||||||||||||||||||||    
T  11096234 atatatactcactcatgtgttgta 11096257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 327 - 447
Target Start/End: Complemental strand, 37786705 - 37786585
Alignment:
Q  327 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatata 426  Q
    ||||||||| | ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| ||||    
T  37786705 tgatgtcttcataagcagagtctagtaaccaaccttggttagcgtgttaaccagggtagttagtttgttagaggactttgttacaacgtccagttgtata 37786606  T
Q  427 tatactcactcatgtgttgta 447  Q
    |||| ||||||||||||||||    
T  37786605 tatattcactcatgtgttgta 37786585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 306 - 421
Target Start/End: Complemental strand, 37791296 - 37791182
Alignment:
Q  306 tagcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 405  Q
    |||||||||| || ||  |||||||||||| ||||||||||| ||||||  ||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  37791296 tagcttctgatgtgcagcttctgatgtcttcagaagcagagt-tagtaaccaaccttgattagcatgttaaccaaggtagttagtttgttagaggagttt 37791198  T
Q  406 gttacaatgtccagtt 421  Q
    ||||||| || |||||    
T  37791197 gttacaacgttcagtt 37791182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 14685248 - 14685281
Alignment:
Q  275 tattggtttagtaattcagtttagttagttttag 308  Q
    ||||||||||||||||||||||||||||||||||    
T  14685248 tattggtttagtaattcagtttagttagttttag 14685281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 11096073 - 11096116
Alignment:
Q  275 tattggtttagtaattcagtttagttagttttagcttctgaagt 318  Q
    ||||| |||| |||||||||||||||||||||| ||||||||||    
T  11096073 tattgatttaataattcagtttagttagttttaacttctgaagt 11096116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 324 - 447
Target Start/End: Original strand, 49388 - 49511
Alignment:
Q  324 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 423  Q
    |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |    
T  49388 ttctgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagagaagtttgttacaacgtctagttgt 49487  T
Q  424 atatatactcactcatgtgttgta 447  Q
    ||||||||||||||||||||||||    
T  49488 atatatactcactcatgtgttgta 49511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 7e-47; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 275 - 447
Target Start/End: Complemental strand, 7501560 - 7501370
Alignment:
Q  275 tattggtttagtaattcagtttagttagttttagcttctgaagtacaatttctgatgtctttaga------------------agcagagtctagtaata 356  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||                  ||||||||||||||| |    
T  7501560 tattgctttagtaattcagtttagttagttttagcttctgaagtacaacttctgatgtcttcagagcttctgatgtcttcacaagcagagtctagtaaca 7501461  T
Q  357 aaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatactcactcatgtgttgta 447  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| | |||||||||||||||||||||||    
T  7501460 aaccttggttagcgtgttaaccaagatagttagtttgttagaggagtttgttacaacgcccagttgtttatatactcactcatgtgttgta 7501370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 324 - 447
Target Start/End: Original strand, 28249226 - 28249349
Alignment:
Q  324 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 423  Q
    |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |    
T  28249226 ttctgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagagaagtttgttacaacgtctagttgt 28249325  T
Q  424 atatatactcactcatgtgttgta 447  Q
    ||||||||||||||||||||||||    
T  28249326 atatatactcactcatgtgttgta 28249349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 307 - 447
Target Start/End: Original strand, 31888483 - 31888623
Alignment:
Q  307 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 406  Q
    ||||||| |||| ||  |||||||||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  31888483 agcttctaaagtgcagcttctgatgtcttcagaagcatagtctagtaacaaaccttggttagcgtgttaactaaggtagttagtttgttagagaagtttg 31888582  T
Q  407 ttacaatgtccagttatatatatactcactcatgtgttgta 447  Q
    |||||| || || || |||||||||||||||||||||||||    
T  31888583 ttacaacgtgcaattgtatatatactcactcatgtgttgta 31888623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 228 - 302
Target Start/End: Complemental strand, 367548 - 367474
Alignment:
Q  228 gaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtttagtaattcagtttagttag 302  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||    
T  367548 gaagttgggaatggctgaagcatctaactaaatgaattaaggaggtgtattgattaagtaattcattttagttag 367474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 31888329 - 31888366
Alignment:
Q  274 gtattggtttagtaattcagtttagttagttttagctt 311  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31888329 gtattggtttagtaattcagtttagttagttttagctt 31888366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 324 - 447
Target Start/End: Complemental strand, 44541486 - 44541363
Alignment:
Q  324 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 423  Q
    ||||| |||||| ||||||| |||||| |||  ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  44541486 ttctgttgtcttcagaagcatagtctaataaccaaccttgattagtgtgttaaccagggtagttagtttgttagaggagtttgttacaatgtccagttgt 44541387  T
Q  424 atatatactcactcatgtgttgta 447  Q
    ||||||||||||||||||||||||    
T  44541386 atatatactcactcatgtgttgta 44541363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 28451093 - 28451021
Alignment:
Q  205 agcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtatt 278  Q
    ||||||||||| ||||||| ||| ||  ||||||||| |||||   |||||||| |||||||||||||||||||    
T  28451093 agcaactttgaatacttgaggaacaatctaggaatggttgaagtcactaactaa-tgaattaaggaggtgtatt 28451021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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