View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17309_low_40 (Length: 223)
Name: NF17309_low_40
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 5811633 - 5811426
Alignment:
| Q |
1 |
ggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaatataaagtctttttga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5811633 |
ggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaatataaagtctttttga |
5811534 |
T |
|
| Q |
101 |
acgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactgaaatcggcccgtgcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| |
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| T |
5811533 |
acgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactgaaatgggtccttgcta |
5811434 |
T |
|
| Q |
201 |
cttctctg |
208 |
Q |
| |
|
|||||||| |
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| T |
5811433 |
cttctctg |
5811426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 4 - 205
Target Start/End: Complemental strand, 27736949 - 27736748
Alignment:
| Q |
4 |
ccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaatataaagtctttttgaacg |
103 |
Q |
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||||||||| | |||||||| || ||||||||||| | ||| ||||| ||||||| || | | ||||||||||||| ||||||||||| |||||||| | |
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| T |
27736949 |
ccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaactttgtcaagtgcatcatcataaatctcctgaatataaagtatttttgaatg |
27736850 |
T |
|
| Q |
104 |
atctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactgaaatcggcccgtgctactt |
203 |
Q |
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| T |
27736849 |
atctaccgggaaatgacttcaacaacgtattcaagtcccttgacaccttcaaagagaaactacgtgatgaaatggaaactaaaataggcccgtgctactt |
27736750 |
T |
|
| Q |
204 |
ct |
205 |
Q |
| |
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|| |
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| T |
27736749 |
ct |
27736748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 5 - 206
Target Start/End: Complemental strand, 32627984 - 32627783
Alignment:
| Q |
5 |
caaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaatataaagtctttttgaacga |
104 |
Q |
| |
|
|||||||||| |||||||||| || |||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| | | ||||||||| |
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| T |
32627984 |
caaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatatttgaacga |
32627885 |
T |
|
| Q |
105 |
tctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactgaaatcggcccgtgctacttc |
204 |
Q |
| |
|
||||||||||||||| |||||| | |||||| ||||||||||| |||||||||||||||| | ||||||||| |||||||| || || |||| |||| |
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|
| T |
32627884 |
tctaccgggaaatgacttcaacaccatatttacgtcccttgacattttcaaagaaaaactacttgatgaaatggggactgaaatgggtccatgcttcttc |
32627785 |
T |
|
| Q |
205 |
tc |
206 |
Q |
| |
|
|| |
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|
| T |
32627784 |
tc |
32627783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 32704216 - 32704008
Alignment:
| Q |
1 |
ggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccga----atataaagtcttt |
96 |
Q |
| |
|
|||||||||||||| |||| |||||| || | |||||||||||| |||||| |||||||||| ||||||||||||||||| || |||||| |||||| |
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|
| T |
32704216 |
ggaccaaacactttgttggcgatctcagatactatcaaggttgtggaaaagatttgtcgagagcttaatcataaatctcctgaatatatataaggtcttt |
32704117 |
T |
|
| Q |
97 |
ttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactgaaatcggcccgt |
196 |
Q |
| |
|
|||||||||||||| || || || |||||| | ||||||| |||||| ||||| ||||||||||| |||| |||||||||||| ||||| | || | |
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| T |
32704116 |
ttgaacgatctaccagggaacgacttcaacaatgtatttaggtccctcgacacgttcaaagaaaatctacaggctgaaatggaaaccgaaatggtacctt |
32704017 |
T |
|
| Q |
197 |
gctacttct |
205 |
Q |
| |
|
||||||||| |
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|
| T |
32704016 |
gctacttct |
32704008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 32709923 - 32709822
Alignment:
| Q |
4 |
ccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaatataaagtctttttgaacg |
103 |
Q |
| |
|
||||||||||| |||||| | || ||| |||||||||| || ||||||||||||||||| | |||||| ||||||||||||| || ||||| ||||||| |
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| T |
32709923 |
ccaaacactttgttggtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatgaatctcccgaatacaaggtcttcttgaacg |
32709824 |
T |
|
| Q |
104 |
at |
105 |
Q |
| |
|
|| |
|
|
| T |
32709823 |
at |
32709822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 20115823 - 20116030
Alignment:
| Q |
1 |
ggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaatataaagtctttttga |
100 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||| |||| | |||||| ||||||| |||||| | |||| ||||| |
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| T |
20115823 |
ggaccaaacaccttgttggtgatctcagaaattatcaaggttgtggaaaagctttgtatagaattgaatcatgaatctcctgaatatgatgtctctttga |
20115922 |
T |
|
| Q |
101 |
acgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactgaaatcggcccgtgcta |
200 |
Q |
| |
|
|||||||| | ||||| || ||||||| | |||||| |||||||||||||||||||||||| || ||||||| |||||| | |||| || || ||||| |
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|
| T |
20115923 |
acgatctatccggaaacgacttcaacggcatatttaagtcccttgacaccttcaaagaaaagctttctaatgaattggaaaataaaatgggtccttgcta |
20116022 |
T |
|
| Q |
201 |
cttctctg |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
20116023 |
cttctctg |
20116030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 21943836 - 21943661
Alignment:
| Q |
1 |
ggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaatataaagtctttttga |
100 |
Q |
| |
|
|||| ||| ||||| ||||||||||| || ||||| || ||||| ||||||||||||| ||| | |||||| |||||||||||||||| || ||||||| |
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|
| T |
21943836 |
ggactaaatactttgttggtgatctcggagattataaatgttgtggaaaagctttgtcaagagttgaatcatgaatctcccgaatataaggtatttttga |
21943737 |
T |
|
| Q |
101 |
acgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaat |
176 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
21943736 |
acgatctacccggaaacgatttcaacaacgtatttaggtcccttgagaccttcaaagaaaaactttgtaatgaaat |
21943661 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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