View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17309_low_41 (Length: 208)
Name: NF17309_low_41
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 25610707 - 25610648
Alignment:
| Q |
12 |
agagatgaagaaaagaaatgcaagaatcttgttagagttgcaaaagtgatggagaagaat |
71 |
Q |
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| T |
25610707 |
agagatgaagaaaagaaatgcaagaatcttgttagagttgcaaaagtgatggagaagaat |
25610648 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 25609765 - 25609725
Alignment:
| Q |
69 |
aatcttaatatgcattaacaggcaccaaaatcattgtaggt |
109 |
Q |
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| T |
25609765 |
aatcttagtatgcaataactggcaccaaaatcattgtaggt |
25609725 |
T |
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