View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17309_low_45 (Length: 203)
Name: NF17309_low_45
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_low_45 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 34304885 - 34305072
Alignment:
| Q |
16 |
tcattgctggttggtctttctcaactccaaaggaggtttgtttcatgacgcaaaatggatctgggaaatgatcggataagagagggacgggggaatccat |
115 |
Q |
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| T |
34304885 |
tcattgctggttggtctttctcaactccaaaggaggtttgtttcatgacgcaaaatggatctgggaaatgatcggataagagagggatgggggaatccat |
34304984 |
T |
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| Q |
116 |
ggatggtattggtgaacctttggttttggtaccagtaagaacaagcaagaaaaatggtactagtaacatgttgagttgttgtagcctc |
203 |
Q |
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| T |
34304985 |
ggatggtattggtgaacctttggttttggtaccagtaagaacaagcaagaaaaatggtactagtaacatgttgagttgttgtagcctc |
34305072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 33426186 - 33426001
Alignment:
| Q |
16 |
tcattgctggttggtctttctcaactccaaaggaggtttgtttcatgacgcaaaatggatctgggaaatgatcggataagagagggacgggggaatccat |
115 |
Q |
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| T |
33426186 |
tcatggctgattggtctttctcaactccaaagtaggtttgttccatgacacaaaatgggtctgggaaatgatcagctaagagagggtttggggaatccat |
33426087 |
T |
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| Q |
116 |
ggatggtattggtgaacctttggttttggtaccagtaagaacaagcaagaaaaatggtactagtaacatgttgagttgttgtagcct |
202 |
Q |
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| T |
33426086 |
ggatggcattgctaatcctttggctttggtagga-aaactacaagcaagaaaaatggtactggtaacatgttgagttgttgtagcct |
33426001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 34314358 - 34314162
Alignment:
| Q |
16 |
tcattgctggttggtctttctcaactccaaaggaggtttgtttcatgacgcaaaatggatctgggaaatgatcggataagagagggacgggggaatccat |
115 |
Q |
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| T |
34314358 |
tcatggctgattggtctatctcaactccataggggatttgttccgtgacgcaaaatcggtctgggaaatgatcagctaagagaggattgggagaatccat |
34314259 |
T |
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| Q |
116 |
ggatggtattggtgaacctttggttttggta---------ccagtaagaacaagcaagaaaaatggtactagtaacatgttgagttgttgtagcctc |
203 |
Q |
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| T |
34314258 |
ggaaggtggtagcaaaccttttgctttggtaggaaaaccaccagtaagaacaagcaagaaaaatggtactagtaacatgttgagttgttgtagcctc |
34314162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 34317390 - 34317576
Alignment:
| Q |
26 |
ttggtctttctcaactccaaaggaggtttgtttcatgacgcaaaatggatctgggaaatgatcggataagagagggacgggggaatccatggatggtatt |
125 |
Q |
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| T |
34317390 |
ttggtctttctcaactccaaaggggatttcttccatgacgcaatattggtctgggaaatgatcagctaagagaggattgggagaatccatggaaggtggc |
34317489 |
T |
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| Q |
126 |
ggtgaacctttggttttggt---------accagtaagaacaagcaagaaaaatggtactagtaacatgttgagttgttgtagcctc |
203 |
Q |
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| T |
34317490 |
actggaccttttgctttggttggaaaactaccagcaagaacaatcaagaaaaaaagtactagtaacatgttgagttgttgtagcctc |
34317576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 34311754 - 34311703
Alignment:
| Q |
152 |
aagaacaagcaagaaaaatggtactagtaacatgttgagttgttgtagcctc |
203 |
Q |
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| T |
34311754 |
aagaataagcaagagaaatggtacgagtaacatgttgagttgttctagcctc |
34311703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 25651513 - 25651711
Alignment:
| Q |
16 |
tcattgctggttggtctttctcaactccaaaggaggtttgtttcatgacgcaaaatggatctgggaaatgatcggataagagagggacgggggaatccat |
115 |
Q |
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| T |
25651513 |
tcatggctgattggtctttctcaattccaaagggggtttgttccgcgacccaaaatgggtttgggaaatgatcagctaagagaggattgggagaatccat |
25651612 |
T |
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| Q |
116 |
ggatggtattggtgaacctttggttttgg---------taccagtaagaacaagcaagaaaaatggta----ctagtaacatgttgagttgttgtagcc |
201 |
Q |
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| T |
25651613 |
ggaaggtaatagtgaacctttggttctggtaggaaaactaccagcaagaacacacaagaaaaatggtactagctagtaacatgttgagttgttgtagcc |
25651711 |
T |
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