View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17309_low_8 (Length: 402)
Name: NF17309_low_8
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 28889086 - 28888711
Alignment:
| Q |
19 |
cttgagcacaatgatttaccagaattagccattggtgagacttgtaactctgttggacagtactccacacatgatggttttgctcaatgtctggataaga |
118 |
Q |
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| T |
28889086 |
cttgagcacaatgatttaccagaattagccattggtgagacttgtaactctgttggacagtactccacacatgatggttttgctcaatgtctggataaga |
28888987 |
T |
|
| Q |
119 |
gaacagatgttttaggtctgtcaggctttcctatctatactccctcttctttcatatacttactgtgtgcttaaactacttcacttttttaacattcttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28888986 |
gaacagatgttttaggtctgtcaggctttcctatctatactccctcttctttcatatacttactgtgtgcttaaactacttcacttttttaacattcttt |
28888887 |
T |
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| Q |
219 |
gtataggatatttggtattgcatgttattatcttcacattcttgtcatgctgtgatttgtcattgcattgagattctttctatatactgtgtttgtttcc |
318 |
Q |
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| T |
28888886 |
gtataggatatttggtattgcatgttattgtcttcacattcttgtcatgctgtgatttgtcattgcattgagattctttctatatattgtgtttgtttcc |
28888787 |
T |
|
| Q |
319 |
attttctaattaatatcacatctgagttcaatatactatagtcccatggtgatgtttttatcatttcattcctatg |
394 |
Q |
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| T |
28888786 |
attttctaactaatatcacatctgagttcaatatattatagtcccatggtgatgtttttatcatttcattcctatg |
28888711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 44 - 295
Target Start/End: Complemental strand, 28913373 - 28913123
Alignment:
| Q |
44 |
tagccattggtgagacttgtaactctgttggacagtactccacacatgatggttttgctcaatgtctggataagagaacagatgttttaggtctgtcagg |
143 |
Q |
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| T |
28913373 |
tagccattggagagacttgtaactctggaggacagtactccacacataatggttttgctctatgtctggataagagaacagatgttgtaggtctgtcagg |
28913274 |
T |
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| Q |
144 |
ctttcctatctatactccctcttctttcatatacttactgtgtgcttaaactacttcacttttttaacattctttgtataggatatttggtattgcatgt |
243 |
Q |
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| T |
28913273 |
atttcctatctatactccctcttctttcatatatctattgtgtgctttagctacttcgagtttttaacattctgtaaataagattcttgatatcgcatct |
28913174 |
T |
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| Q |
244 |
-ta-ttatcttcacattcttgtcatgctgtgatttgtcattgcattgagattct |
295 |
Q |
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|| || |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28913173 |
atacttttcttcaca---ttgtcatgctgtgatttgtcattgcattgagattct |
28913123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 22 - 300
Target Start/End: Complemental strand, 28899049 - 28898775
Alignment:
| Q |
22 |
gagcacaatgatttaccagaattagccattggtgagacttgtaactctgttggacagtactccacacatgatggttttgctcaatgtctggataagagaa |
121 |
Q |
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| T |
28899049 |
gagcaaaaagatttgccagaatcagccattggagagacttgtaactcttttgcacaatactccacacatgatggtttttcccaatgtctggataagagag |
28898950 |
T |
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| Q |
122 |
cagatgttttaggtctgtcaggctttcctatctatactccctcttctttcatatacttactgtgtgcttaaacta-cttcacttttttaacattctttgt |
220 |
Q |
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|||||||| ||||||||| ||||||||||||| |||||| ||| |||||||| || | ||||||||||||| ||| | ||||||||| ||| | | |
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| T |
28898949 |
cagatgttgtaggtctgtgaggctttcctatccatactctctc----ttcatatatctattttgtgcttaaactagcttaa--tttttaacaatctgtat |
28898856 |
T |
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| Q |
221 |
ataggatatttggtattgcat--gttattatcttcacattcttgtcatgctgtgatttgtcattgcattgagattctttcta |
300 |
Q |
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| T |
28898855 |
ataggatttttgatattgaatcagtta-tatcttcacattcctgtcatactgtgatcagtcattgcattgagattctctcta |
28898775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 28922738 - 28922672
Alignment:
| Q |
80 |
actccacacatgatggttttgctcaatgtctggataagagaacagatgttttaggtctgtcaggctt |
146 |
Q |
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|||||||||||||||||||| | ||||||| |||||||||| |||||||| ||||||||| |||||| |
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| T |
28922738 |
actccacacatgatggttttacccaatgtccggataagagagcagatgttgtaggtctgtgaggctt |
28922672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 28931646 - 28931592
Alignment:
| Q |
122 |
cagatgttttaggtctgtcaggctttcctatctatactccctcttctttcatata |
176 |
Q |
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| T |
28931646 |
cagattttctaggtctgtcaggctttcctatccatactcccttttctttcatata |
28931592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 300
Target Start/End: Complemental strand, 28922619 - 28922579
Alignment:
| Q |
260 |
ttgtcatgctgtgatttgtcattgcattgagattctttcta |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||| |
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| T |
28922619 |
ttgtcatgctgtgatttgtcattgcattaagattctgtcta |
28922579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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