View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1730_low_1 (Length: 409)
Name: NF1730_low_1
Description: NF1730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1730_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 401
Target Start/End: Complemental strand, 479355 - 478962
Alignment:
| Q |
7 |
aaataagaagacacaacaactcaatgagtaattaacatgcagttgagtttcttgtcaatattcaattcattttacactatagttagtttcatgtgacatg |
106 |
Q |
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| T |
479355 |
aaataagaagacacaacaactcaatgagtaattaacatgcagttgagtttcttgtcaatattcagttcattttacactatagttagtttcatgtgacatg |
479256 |
T |
|
| Q |
107 |
tatgtatgtatgacatnnnnnnnggaatgctcaaggaggcccaaggtaaagaacattcactgactcacctcatattcaccttcacagagggatgaaaaat |
206 |
Q |
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| T |
479255 |
tatgtatgtatgacataaaaaaaggaatgctcaaggaggcccaaggtaaagaacattcactgactcacctcatattcaccttcacagagggatgaaaaat |
479156 |
T |
|
| Q |
207 |
gtaatgatgtacaagcaccattttaatgtctttcttaggataaatgtaaattgaattatatttgggaggttgttatctcattctcaaagtcattttgaaa |
306 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
479155 |
gtaatgatgtacaagcaccattt-aatgtctttcttaggataaatgtaaattcaattatatttgggaggttgttatctcattctcaaagtcattttgaaa |
479057 |
T |
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| Q |
307 |
gtatgcatatataataatatttcagaaagtatacttccaacaaaaactcannnnnnnggtttgagtatactactgaatatatgtgtgatattctt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
479056 |
gtatgcatatataataatatttcagaaagtatacttccaacaaaaactcatttttttggtttgagtatactactgaatatatgtgtgattttctt |
478962 |
T |
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