View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1730_low_3 (Length: 316)
Name: NF1730_low_3
Description: NF1730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1730_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 4675840 - 4676123
Alignment:
| Q |
13 |
attctctaacagttaaactaactaagactataacaattatatccttcaaaaaagacttttaacaattattttatttgagggcctttttccttgaaaaaat |
112 |
Q |
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| T |
4675840 |
attctctaacagttaaactaactaagactataacaattatatccttcaaaaaagactattaacaattattttatttgagggcctttttccttgaaaaaat |
4675939 |
T |
|
| Q |
113 |
atatgttttattggagatctaaagcaagggtttggtccgcttcacccttgggtccgtgtaatacacaaaccatattannnnnnnaagggaaaaaccataa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4675940 |
atatgttttattggagatctaaagcaagggtttggtccgcttcatccttgggtccgtgtaatacacaaaccatattgtttttttaagggaaaaaccataa |
4676039 |
T |
|
| Q |
213 |
tgattttattagttaaaatatggatcatatacgggnnnnnnnnnnnnngaactaattccatcatgactaaaatcaaaataacaatatttt |
302 |
Q |
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|||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4676040 |
tgattttagtagttaaaatatggataatatacgg------aaaaaaaagaactaattccatcatgactaaaatcaaaataacaatatttt |
4676123 |
T |
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