View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1730_low_4 (Length: 299)
Name: NF1730_low_4
Description: NF1730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1730_low_4 |
 | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0286 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 283
Target Start/End: Complemental strand, 13048 - 12776
Alignment:
| Q |
11 |
cacagatgcgggtggaattgtgatagcgaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttc |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13048 |
cacagatgcgggtggaattgtgatagagaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttc |
12949 |
T |
|
| Q |
111 |
agcttgaatacgtgaattccactttctataaccaatgcttcctctatgcaaccctcacacttaaacgtaatctctgcatggatccattcagctattaaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12948 |
agcttgaatacgtgaattccactttctataaccaatgcttcctctatgcaaccctcacacttaaacgtaatctctgcatggatccattcagctattaaaa |
12849 |
T |
|
| Q |
211 |
gtgcttcgcctagtacagattcgagtttcatctcttgcagtcgtagatcatatagatatgtatgatctggttg |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12848 |
gtgcttcgcctagtacagattcgagtttcatctcttgcagtcgtagatcatatagatatgtatgatctggttg |
12776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 2170213 - 2170485
Alignment:
| Q |
11 |
cacagatgcgggtggaattgtgatagcgaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttc |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170213 |
cacagatgcgggtggaattgtgatagagaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttc |
2170312 |
T |
|
| Q |
111 |
agcttgaatacgtgaattccactttctataaccaatgcttcctctatgcaaccctcacacttaaacgtaatctctgcatggatccattcagctattaaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170313 |
agcttgaatacgtgaattccactttctataaccaatgcttcctctatgcaaccctcacacttaaacgtaatctctgcatggatccattcagctattaaaa |
2170412 |
T |
|
| Q |
211 |
gtgcttcgcctagtacagattcgagtttcatctcttgcagtcgtagatcatatagatatgtatgatctggttg |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170413 |
gtgcttcgcctagtacagattcgagtttcatctcttgcagtcgtagatcatatagatatgtatgatctggttg |
2170485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 61 - 283
Target Start/End: Complemental strand, 2188357 - 2188135
Alignment:
| Q |
61 |
tttctcattcatacggattggtgaatcgaatatcctccatactacttttcagcttgaatacgtgaattccactttctataaccaatgcttcctctatgca |
160 |
Q |
| |
|
||||||| | || ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| |||||||| ||| |
|
|
| T |
2188357 |
tttctcaattatgcggattggtaaatcgaatatcctccatactagttttcagcttgaatacgtgaactccactttctataaacaattcttcctctctgcc |
2188258 |
T |
|
| Q |
161 |
accctcacacttaaacgtaatctctgcatggatccattcagctattaaaagtgcttcgcctagtacagattcgagtttcatctcttgcagtcgtagatca |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| || || | || |||||||||||| |||| ||||| |||| |||||| |
|
|
| T |
2188257 |
gccctcacacttaaacgtaatctctgcatggatccattcatctattaaatctgttttctccaggtcagattcgagttccatcacttgctgtcgcagatca |
2188158 |
T |
|
| Q |
261 |
tatagatatgtatgatctggttg |
283 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2188157 |
tatagatatgtatgatctggttg |
2188135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 16694636 - 16694585
Alignment:
| Q |
90 |
atatcctccatactacttttcagcttgaatacgtgaattccactttctataa |
141 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
16694636 |
atatcctccatgctacttttctgcttgaataagtgaattccactttctataa |
16694585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University