View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731-Insertion-1 (Length: 885)
Name: NF1731-Insertion-1
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 261 - 597
Target Start/End: Complemental strand, 33251103 - 33250767
Alignment:
| Q |
261 |
gagcagtgctatctgatcccaagaaaagaagtatgtacgatgctggcttgtatgatcctcaagaggaagaagttgaggtaattatgtgcttatggaaaat |
360 |
Q |
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| T |
33251103 |
gagcagtgctatctgatcccaagaaaagaagtatgtacgatgctggcttgtatgatcctcaagaggaagaagttgaggtaattatgtgcttatggaaatt |
33251004 |
T |
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| Q |
361 |
tttcctgtagttttccttgaagattgtttcttttttgtttattagtttgttatattattatggttctgaaaaacatgccttgtttctaattttaggattt |
460 |
Q |
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| T |
33251003 |
tttcctgtagtttttcttgaagattgtttcgtttttgtttattagtttgttatattattatggtgctgaaagacatgcattgtttctaattttaggattt |
33250904 |
T |
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| Q |
461 |
ttctgattttgtggacgaaatggtgtcccttatggctgaagttaggcgagaggtatggttcttttgaccatttcctataactaatcctttagaaaagttt |
560 |
Q |
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| T |
33250903 |
ttctgattttgtggacgaaatggtgtcccttatggctgaagttaggcgagaggtatggttcttttgaccacttcctataactaatcctttagaaaagttt |
33250804 |
T |
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| Q |
561 |
gatcttggtaattatttcatagctccaattttgaatt |
597 |
Q |
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| T |
33250803 |
gatcttggtaattatttcatagctccaattttgaatt |
33250767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 702 - 883
Target Start/End: Complemental strand, 33250688 - 33250507
Alignment:
| Q |
702 |
catgtcacaaaaacattcttgcaggagaaggtttatggtttggaggagttgcaggacatgttcatggaaatggctgaaggattccagagtccttcaatgt |
801 |
Q |
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| T |
33250688 |
catgtcacaaaaacattcttgcaggagaaggtttatggtttggaggagttgcaggacatgttcatggaaatggctgaaggattccagagtccttcagtgt |
33250589 |
T |
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| Q |
802 |
attgtgggacaccatcngtggntgatgaatccnttgctaacagaggaagtgttttgacacgataattgataatataagccgg |
883 |
Q |
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| T |
33250588 |
attgtgggacaccatcggtggttgatgaatcctttgctaacagaggaagtgttttgacacgataattgataatataagccgg |
33250507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 33251367 - 33251205
Alignment:
| Q |
8 |
tctttttgggaatttgcattgttattcaaatttgaatgtgaggtgctgattgtgaatttcaatgcatgcagcaatggcatccagataggtggacaagaac |
107 |
Q |
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| T |
33251367 |
tctttttgggaatttgcattgttattcaaatttgaatgtgaggtgctgattgtgaatttcaatgcatgcagcaatggcatccagataggtggacaagaac |
33251268 |
T |
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| Q |
108 |
accttctttacttagcgaagccaagtgtaaatttcagaacattcaagaagcttattcaggtat |
170 |
Q |
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| T |
33251267 |
accttctttacttagcgaagccaagtgtaaatttcagaacattcaagaagcttattcaggtat |
33251205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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