View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731-Insertion-3 (Length: 444)
Name: NF1731-Insertion-3
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731-Insertion-3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 444
Target Start/End: Original strand, 10420969 - 10421420
Alignment:
| Q |
8 |
agttctcatggtgtagttcaagtggttgaactgagacatctagaaaaatctgcataataactttaacttttgaattgaaacttt------------ataa |
95 |
Q |
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| T |
10420969 |
agttctcatggcgtagttcaagtggttgaactgagacatctagaaaaatctgcataataactttaacttttgaattgaaactttcattacaaatgtataa |
10421068 |
T |
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| Q |
96 |
gttccggtatgtcattatgatgttgggaccattggagttgaagactggtctgtgcttacattctgaatatcatcagttagtttaagtgggtggcagcctc |
195 |
Q |
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| T |
10421069 |
gttccggtatgtcattatgatgttgggaccattggagttgaagactggtctgtgcttatattctgaatatcatcagttagtttaagtgggtggcagcctc |
10421168 |
T |
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| Q |
196 |
attaatgtaaaggctcaacttacaccatctaaactactctatacattgttgtaatctctaacatatgaatatccagatgacaagtaattcatctttttct |
295 |
Q |
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| T |
10421169 |
attaatgtaaaggctcaacttacaccatctaaactactctatacattgttgtaatctctaacatatgcatatccagatgacaagtaattcatctttctct |
10421268 |
T |
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| Q |
296 |
--ttactagnnnnnnnctttctcttataatttgggtgggatt-gatagataataaaatattgagtttaagctattagttcttggaaatctatgttatgca |
392 |
Q |
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||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
10421269 |
ctttactagtttttttctttctcttataatttgggtgggatttgttagataataaaatattgagtttaaactattagttctttgaaatctatgttatgca |
10421368 |
T |
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| Q |
393 |
gtgctattgtaatattattgatattttgtgaacccttaaccgtctttgttag |
444 |
Q |
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| T |
10421369 |
gtgctattgtaatattattgatattttatgaacccttaaccgtctttgttag |
10421420 |
T |
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