View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731-Insertion-4 (Length: 578)
Name: NF1731-Insertion-4
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 246
Target Start/End: Complemental strand, 8879146 - 8878906
Alignment:
| Q |
8 |
caaatgacttgttgtttgtttgggattgggactca--attttatatatgtatcatcggttgtatatttctgcatttgagcatttatatacaaaataattg |
105 |
Q |
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| T |
8879146 |
caaatgacttgttgtttgtttgggattgggactcacaattttatatatgtatcatcggttgtatatttctgcatttgagcatttatatacaaaataattg |
8879047 |
T |
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| Q |
106 |
tcaccatttaaaaattataaaatgttagttttgtaaccatcatttgaactacggcctcattttcaaattcttttaggggtttagctcaaccacttgaatt |
205 |
Q |
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| T |
8879046 |
tcaccattttaaatttataaaatgttagttttgcaaccatcatttgaactacggcctcattttcaaattcttttaggggtttagctcaaccacttgaatt |
8878947 |
T |
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| Q |
206 |
atgtcttgaggatgtgtgaagaattgatagttgttatgatc |
246 |
Q |
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| T |
8878946 |
atgtcttgaggatgtgtgaacaattgatagttgttatgatc |
8878906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 278 - 578
Target Start/End: Complemental strand, 8878874 - 8878568
Alignment:
| Q |
278 |
gtttgtagaggtacataannnnnnnataaattagggttggtccaatgtatttgtaggcttaaaatttggtttacattactgcatgcaattgtcattgatg |
377 |
Q |
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| T |
8878874 |
gtttgtagaggtacataatttttttataaattagggtcggtccaatgtatttgtaggcttaaaatttggtttacattactgcatgcaattgtcattgatg |
8878775 |
T |
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| Q |
378 |
tt-----------taagtggaacagtccaaaaagggattaaaagcgttacgcgtatcatgtgaaggaacaagctatgcatataaaaaagcaggtaaacca |
466 |
Q |
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| T |
8878774 |
ttccataacgtggtaagtggaacagtccaaaaagggattaaaagcgt-------agcatgtgaaggaacaagctatgcatataaaaaagcaggtaaacca |
8878682 |
T |
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| Q |
467 |
tttttggttcaggttcagcat--tcaaagcaagagtggctaaggtttcgtgtaggacataaaccattctcactcccagaaacttacagtattatatggat |
564 |
Q |
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| T |
8878681 |
tttttggttcaggttcagcatattcaaagcaagagtggctaaggtttcgtgtaggacataaaccattctcactcccagaaacttacagtattatatggac |
8878582 |
T |
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| Q |
565 |
ccaatttaacacca |
578 |
Q |
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| T |
8878581 |
ccaatttaacacca |
8878568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 54 - 187
Target Start/End: Complemental strand, 8882948 - 8882814
Alignment:
| Q |
54 |
gtatcatcggttgtatatttctgcatttgagcatttatatacaaaataattgtcaccatttaaaaattataaaatgttagttttgtaaccatcatttgaa |
153 |
Q |
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| T |
8882948 |
gtatcatccgctgtatattcttacatttgaacatttctatacaaaataattgtcaccattttagatataaaaaaatttagttttataaccatcatttgaa |
8882849 |
T |
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| Q |
154 |
ctacgg-cctcattttcaaattcttttaggggttt |
187 |
Q |
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| T |
8882848 |
ctatggagcttattttcaaattcttttaggtgttt |
8882814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 466
Target Start/End: Original strand, 8862894 - 8862973
Alignment:
| Q |
380 |
taagtggaacagtccaaaaagggattaaaagcgttacgcgtatcatgtgaaggaacaagctatgcatataaaaaagcaggtaaacca |
466 |
Q |
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| T |
8862894 |
taagtggaacagtccaaaaagggcttaaaagcgtggc-------atgtgaaggaacaagccatgcatatcaaaaagcagataaacca |
8862973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 578
Target Start/End: Original strand, 8863156 - 8863231
Alignment:
| Q |
501 |
ggctaaggtttcgtgtaggacataaaccattctcactcccagaaacttacagtattatatggatccaatttaacacca |
578 |
Q |
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| T |
8863156 |
ggctaaggtgttgtgtaggacacaaaccattccccc--ccggaaatttacagtattatatggacacaatttaacacca |
8863231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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