View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731-Insertion-5 (Length: 480)
Name: NF1731-Insertion-5
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 8 - 480
Target Start/End: Complemental strand, 40504197 - 40503742
Alignment:
| Q |
8 |
atatatgctaaatgtaagtttctgtagctgctatcttaatgttttcttgacacaatttacattctttatcgaatatgaagctgacaacagcctgtttagg |
107 |
Q |
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| T |
40504197 |
atatatgctaaatgtaagtttctgtagctgcgatcttaatgttttcttgacacaatttacattctttatcgaatatgaagctgacaacagcctgtttagg |
40504098 |
T |
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| Q |
108 |
gtgaaaagattattcgccatcctaaacttctgcacgttttttattagtatattctgattaaaattaactgctgaatttacattattgctgaattgtttgt |
207 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
40504097 |
gtgaaaagattattagccatcctaaacttctgcacgttttttattagtatattctgattaaaattaactgctgaatt-----------------gtgtgt |
40504015 |
T |
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| Q |
208 |
taccaatgagtctcaaattccaataataatgtgtgttgtgctttaaaatttgagtatactccgtttacggactgagaatatgaatttacattggctggcc |
307 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40504014 |
taccaatgagtctcaaattccaataataatgtgtgctgtgctttaaaatttgagtatactccgtttacggactgagaatatgaatttacattggctggcc |
40503915 |
T |
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| Q |
308 |
actttatgctttttatgtggtttgagttttgaagattcatatcttaggttgttgtaggtaaatcggttatgttgtagtaatatttatcatataccaagaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40503914 |
actttatgctttttatgtggtttgagttttgaagattcatatcttaggttgttgtaggtaaatcggttatgttgtagtaatatttatcatataccaagaa |
40503815 |
T |
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| Q |
408 |
cactaaattggggcaagagaatctagtagtgctatgtggaaatgatacttttcccccttgagttcttattcta |
480 |
Q |
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| T |
40503814 |
cactaaattggggcaagagaatctagtagtgctatgtggaaatgatacttttcccccttgagttcttattcta |
40503742 |
T |
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