View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1731-Insertion-8 (Length: 505)
Name: NF1731-Insertion-8
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731-Insertion-8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 19901438 - 19901680
Alignment:
| Q |
7 |
actttaaatataaactaaatattcatcaagttcaataaggtcatgaagtaataacttacagcaatatcctttgattttgaggaaacccacttgcttggat |
106 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19901438 |
actttaaaaatagactaaatattcatcaagttcaataaggtcatgaagtaataacttacaacaatatcctttgattgtgaggaaacccacttgcttggat |
19901537 |
T |
|
| Q |
107 |
cacctttcaatttgtgtgtgtatacaaatatttcccaacatgttggagtcacttctagagatggtttctaaaaacaaaacggatcaatcaatgttaattg |
206 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19901538 |
cacctttcaatttgtgtctgtctacaaatatttcccaacatgttgtagtcacttctggagatggtttctaaaaacaaaacggatcaatcaatgttaattg |
19901637 |
T |
|
| Q |
207 |
aaattaaaatgcttaacctaacaaatacaattaaactcaaatt |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19901638 |
aaattaaaatgcttaacctaacaaatacaattaaactaaaatt |
19901680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 8e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 34800946 - 34801188
Alignment:
| Q |
7 |
actttaaatataaactaaatattcatcaagttcaataaggtcatgaagtaataacttacagcaatatcctttgattttgaggaaacccacttgcttggat |
106 |
Q |
| |
|
|||||||| ||| |||||| | ||||||||||||||||| ||| |||| |||||||||| || ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34800946 |
actttaaaaatagactaaaaactcatcaagttcaataagttcaccaagttataacttacaagaacatcctttgattttgaggaaactcacttgcttggat |
34801045 |
T |
|
| Q |
107 |
cacctttcaatttgtgtgtgtatacaaatatttcccaacatgttggagtcacttctagagatggtttctaaaaacaaaacggatcaatcaatgttaattg |
206 |
Q |
| |
|
||||||||||||||| | | | ||| | |||||||||||||| ||||| | | ||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
34801046 |
cacctttcaatttgtatatcacttgaaacaagtcccaacatgttggtgtcacatttgcagatgttttctaaaaacaaaacggattaatcaatgttaatta |
34801145 |
T |
|
| Q |
207 |
aaattaaaatgcttaacctaacaaatacaattaaactcaaatt |
249 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
34801146 |
aaattaaaatgtttaacctaacaaatacaataaaactaaaatt |
34801188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 3582193 - 3582088
Alignment:
| Q |
7 |
actttaaatataaactaaatattcatcaagttcaataaggtcatgaagtaataacttacagcaatatcctttgattttgaggaaacccacttgcttggat |
106 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3582193 |
actttaaaaatagactaaatattcatcaagttcaataaggtcatgatgtaataacttacagcaatatcttttgattttgaggaaacccacttgcttggat |
3582094 |
T |
|
| Q |
107 |
cacctt |
112 |
Q |
| |
|
|||||| |
|
|
| T |
3582093 |
cacctt |
3582088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 370 - 455
Target Start/End: Complemental strand, 28007824 - 28007738
Alignment:
| Q |
370 |
cctatacattgcacttgagtata--actgagaggctttatggtcaaatgacttcttaatctctccatcatgttcaggtagccacttaa |
455 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
28007824 |
cctatacattgcacttgagtatataaatgagaggctttatgatcaaatgacttctt-atctctccatcaagttcaggtagccacttaa |
28007738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 28007900 - 28007825
Alignment:
| Q |
253 |
tctgttttcgctcttagtttttgccttgcttttccattcattctcactccatttttcatccaatttcttacgcatt |
328 |
Q |
| |
|
||||||||||| ||| ||| || ||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28007900 |
tctgttttcgccattaatttgtgacttccttttccattcattctcactccatttttcatccaattttttacgcatt |
28007825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University