View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17310_high_4 (Length: 297)
Name: NF17310_high_4
Description: NF17310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17310_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 47129009 - 47129276
Alignment:
| Q |
19 |
ttttatccataattccatctagggttatccacaatcagaattgctagttcaatctctaatgtgtgtacctgttttggtatgtggacgactagttcttcct |
118 |
Q |
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| T |
47129009 |
ttttatccataattccatctagggttatccacaaacacaattgctagttcaatctctaatgtgtgtacctgttttggtatgtggacgactagttcttcct |
47129108 |
T |
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| Q |
119 |
ctacgtggataagggaacttttgtgatccaccaataacaggacgtgcataatctggaccattatctggagttcccaagtcattgtagcatgcatagtcat |
218 |
Q |
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| T |
47129109 |
ctacgtggataaggaaacttttgtgatccaccaataacaggacgtgcataatctggaccattatctggagttcccaagtcattgtagcatgcatagtcat |
47129208 |
T |
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| Q |
219 |
acactctatcccactcattaagtttcccaatccctttaccacggagggtaccaagttcttcttctctc |
286 |
Q |
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| T |
47129209 |
acactctatcccactcattaagtttcccaatccctttaccacggagggtaccaagttcttcttctctc |
47129276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 36923609 - 36923550
Alignment:
| Q |
174 |
gaccattatctggagttcccaagtcattgtagcatgcatagtcatacactctatcccact |
233 |
Q |
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|||| ||||| ||| ||||||| ||||||||||||||||| ||||| || |||||||||| |
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| T |
36923609 |
gacctttatcaggatttcccaaatcattgtagcatgcataatcataaaccctatcccact |
36923550 |
T |
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