View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17310_low_1 (Length: 406)
Name: NF17310_low_1
Description: NF17310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17310_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 199 - 391
Target Start/End: Complemental strand, 11615630 - 11615435
Alignment:
| Q |
199 |
atcaataactgcatttgtaactgacttttagataagtttgttttaaattctat---tagttagattgcttgctccaaaagcaagtggcttgtgtgcctat |
295 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||||||||||||| |
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| T |
11615630 |
atcaataactgcatttgtaactaacttctagataagtttgttttaaattctatagttagttagattgcttgctacacaagcaagtgacttgtgtgcctat |
11615531 |
T |
|
| Q |
296 |
ataaaggctttgtattgtgaaactcaatatatgaatcacattcacatcattaccaattatcattcattctagttctctccttcaattttattgttt |
391 |
Q |
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| T |
11615530 |
ataaaggctttgtattgtgaaactcaaaatatgaatcacattcacatcattaccaatcatcattcattctatttctctccttcaattttattgttt |
11615435 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 44812473 - 44812414
Alignment:
| Q |
199 |
atcaataactgcatt-tgtaactgacttttagataagtttgttttaaattctattagttag |
258 |
Q |
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| T |
44812473 |
atcaaaaactgcattctgtaact-atttttagataagtttgttttaaactctatgagttag |
44812414 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 199 - 321
Target Start/End: Complemental strand, 6681859 - 6681734
Alignment:
| Q |
199 |
atcaataactgca-tttgtaactgacttttagataagtttgttttaaattcta--ttagttagattgcttgctccaaaagcaagtggcttgtgtgcctat |
295 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||| |||||| ||| ||||||| ||| ||||||||| ||||||||||||||||||||||| |
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| T |
6681859 |
atcaataactgcactttgtaactgatttttagataagtttgctttaaactctgagttagttatattacttgctccacaagcaagtggcttgtgtgcctat |
6681760 |
T |
|
| Q |
296 |
ataaaggctttgtattgtgaaactca |
321 |
Q |
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|||||||||||||||||||||||||| |
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| T |
6681759 |
ataaaggctttgtattgtgaaactca |
6681734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 11860076 - 11859960
Alignment:
| Q |
199 |
atcaataactgcatttgtaactgacttttagataagtttgttttaaattcta----ttagttagattgcttgctccaaaagcaagtggcttgtgtgccta |
294 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| |||| |||| |||||||||||||||||||||| |
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| T |
11860076 |
atcaataactgcatttgtaactaacttttagataggtttgtttcaaattctatgagttagttagattacttgttccacaagcaagtggcttgtgtgccta |
11859977 |
T |
|
| Q |
295 |
tataaaggctttgtatt |
311 |
Q |
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|||||||| || ||||| |
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| T |
11859976 |
tataaaggtttcgtatt |
11859960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 199 - 321
Target Start/End: Complemental strand, 24520901 - 24520776
Alignment:
| Q |
199 |
atcaataactgcatttgtaactgacttttagataagtttgtttt-aaattcta----ttagttagattgcttgctccaaaagcaagtggcttgtgtgcct |
293 |
Q |
| |
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|||||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| ||||| || | |||||||| | | ||||||| |
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| T |
24520901 |
atcaataaatgcatttgtaactaacttttagataagtttgttttaaaattctattagttagttagacagcttgttctacaagcaagt-gatattgtgcct |
24520803 |
T |
|
| Q |
294 |
atataaaggctttgtattgtgaaactca |
321 |
Q |
| |
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||| |||||||||||||||||||||||| |
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|
| T |
24520802 |
ata-aaaggctttgtattgtgaaactca |
24520776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 324
Target Start/End: Complemental strand, 11186948 - 11186845
Alignment:
| Q |
226 |
ttagataagtttgttttaaattcta----ttagttagattgcttgctccaaaagcaagtg--gcttgtgtgcctatataaaggctttgtattgtgaaact |
319 |
Q |
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|||| ||||||||||| ||| |||| ||||| ||||| ||||||| | ||||||||| ||| ||||||||||| ||||||||||||||||||||| |
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| T |
11186948 |
ttagttaagtttgtttcaaaatctaatagttagtgagattacttgctctacaagcaagtgactcttttgtgcctatat-aaggctttgtattgtgaaact |
11186850 |
T |
|
| Q |
320 |
caata |
324 |
Q |
| |
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|||| |
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|
| T |
11186849 |
taata |
11186845 |
T |
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