View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17310_low_2 (Length: 388)
Name: NF17310_low_2
Description: NF17310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17310_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 371
Target Start/End: Complemental strand, 1327167 - 1326810
Alignment:
| Q |
14 |
atatatcaaaaacttcaaccccggctccctccgaccaacatcagtaaacgacctcaaaagcctcgagtatccatattggaaagaccattgagcttcatca |
113 |
Q |
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| T |
1327167 |
atatatcaaaaacttcaaccccggctccctccgaccaacatcagtaaacgacctcaaaagcctcgagtatccatattggaaagaccattgagcttcatca |
1327068 |
T |
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| Q |
114 |
gatagattgatcgctgagaaacgtggatgcggattcaaagcggttgatacatcgccccaccaatccggattatttctataccaatcaattgtcatcttaa |
213 |
Q |
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| T |
1327067 |
gatagattgatcgctgagaaacgtggatgcggattcaaagcggttgatacatcgccccaccaatccggattatttctataccaatcaattgtcatcttaa |
1326968 |
T |
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| Q |
214 |
gtccttcctcccaagttgttctctcctcccaaccaagcttcttaagcttttgatcatccaaaaaatatcttttatcattaaaaggcctatcatgaacaaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1326967 |
gtccttcctcccaagttgttctctcctcccaaccaagcttcttaagcttttgatcatccaaaaaatatcttttatcattaaaaggcctatcatgaacaaa |
1326868 |
T |
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| Q |
314 |
ctcaatcannnnnnnagaatccaatttaaataatttgcaaatttcttcagctacatct |
371 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1326867 |
ctcaatcatttttttagaatccaatttaaataatttgcaaatttcttcagctacatct |
1326810 |
T |
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