View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17310_low_6 (Length: 284)
Name: NF17310_low_6
Description: NF17310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17310_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 9381102 - 9380852
Alignment:
| Q |
18 |
catatttatggctatgtgatacataagtggaacaagaagtgtggctgtggcatcattggaagtgatgaattcagtgataatgctacatagtagactaaca |
117 |
Q |
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| T |
9381102 |
catatttatggctatgtgatacaaaagtggaacaagaagtgtggctgtggcatcattggaagtgatgaattcagtgataatgctacatagtagactaaca |
9381003 |
T |
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| Q |
118 |
gcaggaacaattgccaagtatggaacatcttttaagaattctaaggcttttgacattacatcagctagaccactagattgtactccatctgctaaggcaa |
217 |
Q |
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| T |
9381002 |
gcaggaacaattgctaagtatggaacatcttttaagaattctaaggcttttgacattacatcagctagaccactagattgtactccatctgctaaggcaa |
9380903 |
T |
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| Q |
218 |
atccagctcctagaagcaaaattaggttccacggtaactttttgcattcat |
268 |
Q |
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| T |
9380902 |
atccagctcctagaagcaaaattaggttccatggtaactttttgcattcat |
9380852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 268
Target Start/End: Complemental strand, 55739105 - 55738865
Alignment:
| Q |
28 |
gctatgtgatacataagtggaacaagaagtgtggctgtggcatcattggaagtgatgaattcagtgataatgctacatagtagactaacagcaggaacaa |
127 |
Q |
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| T |
55739105 |
gctatatgatatagaagtggaataataagtgtagcagtggcatcattagaagtgatgaattcagtaataatactacttataagactaactgcaggagcaa |
55739006 |
T |
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| Q |
128 |
ttgccaagtatggaacatcttttaagaattctaaggcttttgacattacatcagctagaccactagattgtactccatctgctaaggcaaatccagctcc |
227 |
Q |
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| T |
55739005 |
ttgccaaatatggggcatcttctaagaaatctaaagctttagaaagcacatctgctagaccactagattgaactccatcagctaaagcaaaaccagctcc |
55738906 |
T |
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| Q |
228 |
tagaagcaaaattaggttccacggtaactttttgcattcat |
268 |
Q |
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| T |
55738905 |
aagtaacaaaattaggttccaaggtagtttcttgcattcat |
55738865 |
T |
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