View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17310_low_8 (Length: 239)
Name: NF17310_low_8
Description: NF17310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17310_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 47583584 - 47583800
Alignment:
| Q |
5 |
atgtcgaagaatatactactatttgcatataaaaagaggcatttcttttagccatataacttatagaattcaaacgtgttgttgtagttggaaatgatgt |
104 |
Q |
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| T |
47583584 |
atgtggaaaaatatactactatttgcatataaaaagaggcatttcttttagccatataacttatagaattcaaacgtgttgttgtagttggaaatgatgt |
47583683 |
T |
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| Q |
105 |
taccactttggaatcgttacaatttgaatttgccaaaattgaagcagcaacaaacagatttgctgcagaaaacaggataggcaaaggtggatttggagaa |
204 |
Q |
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| T |
47583684 |
taccactttggaatcgttacaatttgaatttgccaaaattgaagcagcaacaaacagatttgctgcagaaaacaggataggcaaaggtggatttggagaa |
47583783 |
T |
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| Q |
205 |
gtctacaaggtaaataa |
221 |
Q |
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||||||||||||||||| |
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| T |
47583784 |
gtctacaaggtaaataa |
47583800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 47573909 - 47574106
Alignment:
| Q |
23 |
ctatttgcatataaaaagaggcatttcttttagccatataacttatagaattcaaacgtgttgttgtagttggaaatgatgttaccactttggaatcgtt |
122 |
Q |
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| T |
47573909 |
ctatttgcaaacaaaaagatgcatttcctttaaccatataacttatagaattaaaacttgtttctgtagttgggaatgacattaactctttggaatcctt |
47574008 |
T |
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| Q |
123 |
acaatttgaatttgccaaaattgaagcagcaacaaacagatttgctgcagaaaacaggataggcaaaggtggatttggagaagtctacaaggtaaata |
220 |
Q |
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| T |
47574009 |
gcaatttgaatttgccgaaattgaagcagcaacaaacagatttgctgcagataacaggataggcaaaggtggatttggagaagtctacaaggtaaata |
47574106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 47567004 - 47567219
Alignment:
| Q |
5 |
atgtcgaagaatatactactatttgcatataaaaagaggcatttcttttagccatataacttatagaattcaaacgtgttgttgtagttggaaatgatgt |
104 |
Q |
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|||| ||| |||||||| ||||||||| | |||| || ||||||| |||| |||| |||||||||||||||||| ||||||||||||||| |||||| |
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| T |
47567004 |
atgtagaaaaatatacttctatttgcaaacaaaaggaagcatttcctttaaccatgtaacttatagaattcaaaattgttgttgtagttgggaatgatac |
47567103 |
T |
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| Q |
105 |
taccactttggaatcgttacaatttgaatttgccaaaattgaagcagcaacaaacagatttgctgcagaaaacaggataggcaaaggtggatttggagaa |
204 |
Q |
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| T |
47567104 |
gacctctttggagtccttgcaatttgaactagccaatatccaagcagcaacaaacagatttactgcagaaaataggaaaggcaaaggtggatttggagaa |
47567203 |
T |
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| Q |
205 |
gtctacaaggtaaata |
220 |
Q |
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|||||||||||||||| |
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| T |
47567204 |
gtctacaaggtaaata |
47567219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 47592472 - 47592515
Alignment:
| Q |
172 |
gaaaacaggataggcaaaggtggatttggagaagtctacaaggt |
215 |
Q |
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| T |
47592472 |
gaaaacaagattggcaaaggtggatttggagaagtttacaaggt |
47592515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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