View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17311_high_4 (Length: 321)

Name: NF17311_high_4
Description: NF17311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17311_high_4
NF17311_high_4
[»] chr7 (6 HSPs)
chr7 (1-301)||(18395925-18396234)
chr7 (187-246)||(27073633-27073692)
chr7 (187-246)||(27204621-27204680)
chr7 (234-296)||(23565300-23565363)
chr7 (193-294)||(40808414-40808517)
chr7 (200-296)||(36146661-36146759)
[»] chr8 (8 HSPs)
chr8 (179-294)||(11712244-11712361)
chr8 (200-281)||(32902442-32902524)
chr8 (203-281)||(29796578-29796656)
chr8 (148-229)||(7597380-7597462)
chr8 (179-229)||(8153572-8153622)
chr8 (203-256)||(3232092-3232145)
chr8 (179-256)||(8863333-8863409)
chr8 (207-255)||(18141659-18141706)
[»] chr2 (4 HSPs)
chr2 (179-294)||(4560904-4561021)
chr2 (212-256)||(28671797-28671841)
chr2 (211-296)||(11067134-11067221)
chr2 (207-281)||(36773387-36773462)
[»] scaffold0129 (1 HSPs)
scaffold0129 (200-280)||(19854-19933)
[»] chr4 (6 HSPs)
chr4 (141-256)||(21704109-21704225)
chr4 (141-256)||(3739397-3739511)
chr4 (207-294)||(6677306-6677394)
chr4 (200-281)||(36463657-36463738)
chr4 (203-246)||(4587792-4587835)
chr4 (201-234)||(43208174-43208207)
[»] chr1 (5 HSPs)
chr1 (207-281)||(8871315-8871390)
chr1 (195-251)||(2263271-2263327)
chr1 (205-281)||(28265821-28265898)
chr1 (181-229)||(25116407-25116455)
chr1 (230-296)||(49918210-49918278)
[»] chr5 (1 HSPs)
chr5 (182-256)||(5611451-5611524)
[»] chr3 (5 HSPs)
chr3 (182-256)||(21156738-21156811)
chr3 (203-256)||(40519479-40519532)
chr3 (203-256)||(2075350-2075403)
chr3 (207-251)||(9666754-9666797)
chr3 (200-256)||(37761765-37761820)


Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 18395925 - 18396234
Alignment:
Q  1 aggaaaacaaatgttgaaatttgtctaaaatatcgacaaaaattgggccgtgatttgcaaaaatcgtgacgcgattttggttaaggt---------tttg 91  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||         ||||    
T  18395925 aggaaaacaaatgttgaaatttgtctaaaaaatcgacaaaaattgggccgcgatttgcaaaaatcgtgacgagattttggttaaggttttggaggttttg 18396024  T
Q  92 attcgaaaaattgtggcacgaaagaggaaaatcgtggaacgattttaagtaacttgaaatcgtggcacaattagtgaaaattgtgatacgattttctcgg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396025 attcgaaaaattgtggcacgaaagaggaaaatcgtggaacgattttaagtaacttgaaatcgtggcacaattagtgaaaattgtgatacgattttctcgg 18396124  T
Q  192 gacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatcaaggaggtaactttaggttgaatgtct 291  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  18396125 aacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagagagaaactttggatatcaaggaggtaactttaggttgaatgtct 18396224  T
Q  292 ttgatgatgt 301  Q
    ||| ||||||    
T  18396225 ttggtgatgt 18396234  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 27073633 - 27073692
Alignment:
Q  187 ctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagag 246  Q
    |||||| ||| |||||||||||||||||||||||||| |||||| ||||  |||||||||    
T  27073633 ctcggggcttttgcattatataagacttcattcttcaagttttaggtaggacttcaagag 27073692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 27204680 - 27204621
Alignment:
Q  187 ctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagag 246  Q
    |||||| ||| |||||||||||||||||||||||||| |||||| ||||  |||||||||    
T  27204680 ctcggggcttttgcattatataagacttcattcttcaagttttaggtaggacttcaagag 27204621  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 23565363 - 23565300
Alignment:
Q  234 agagcttcaagagtgagaaactttgggtatc-aaggaggtaactttaggttgaatgtctttgat 296  Q
    ||||||||||||| ||||||||| || |||| ||||||||||||||||||| |  |||||||||    
T  23565363 agagcttcaagagagagaaacttgggatatcaaaggaggtaactttaggttaagggtctttgat 23565300  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 40808414 - 40808517
Alignment:
Q  193 acttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtc 290  Q
    ||||||||  ||||||  ||||||||||||||||| |||||||  ||| ||||| || |||||| | | ||| ||||||||||||||| |||||| ||||    
T  40808414 acttgtgctctatatagaacttcattcttcatgttataagtaggacttaaagagagataaacttagagaatcaaaggaggtaactttagggttgagtgtc 40808513  T
Q  291 tttg 294  Q
    ||||    
T  40808514 tttg 40808517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 296
Target Start/End: Complemental strand, 36146759 - 36146661
Alignment:
Q  200 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttag-gttgaatgtctttgat 296  Q
    |||||| |||| ||||||||||||| ||||  | ||||||||||||| || |||||| ||  ||| |||||||||||||||| |||||  |||||||||    
T  36146759 cattatttaaggcttcattcttcattttttgggaagagcttcaagagagaaaaacttgggaaatcaaaggaggtaactttagtgttgagggtctttgat 36146661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 294
Target Start/End: Complemental strand, 11712361 - 11712244
Alignment:
Q  179 acgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactt 277  Q
    |||||||||| ||||| |||||| ||||||||  ||||||||| |||||||| ||||||||||||||| ||||||||| ||||||| || ||||||||||    
T  11712361 acgattttcttgggacatgtgcactatataaggtttcattctttatgttttaggtagagcttcaagagagagaaacttagggtatcaaatgaggtaactt 11712262  T
Q  278 ta-ggttgaatgtctttg 294  Q
    || |||||| ||||||||    
T  11712261 tagggttgagtgtctttg 11712244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 281
Target Start/End: Complemental strand, 32902524 - 32902442
Alignment:
Q  200 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatca-aggaggtaactttagg 281  Q
    |||| ||||||||||||||||||||||||| || || |||||||||| ||||||||| ||  |||| | ||||||||||||||    
T  32902524 cattgtataagacttcattcttcatgttttgaggagggcttcaagagagagaaacttgggaaatcagatgaggtaactttagg 32902442  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 29796656 - 29796578
Alignment:
Q  203 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 281  Q
    |||||||| |||||||||||||||||| || ||| ||||||||| |||||||||  |  ||| |||||||||||||||||    
T  29796656 tatataaggcttcattcttcatgttttgaggaga-cttcaagagagagaaacttgagaaatcaaaggaggtaactttagg 29796578  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 7597380 - 7597462
Alignment:
Q  148 aaatcgtggcacaattagtgaaaattgtgatacga-ttttctcgggacttgtgcattatataagacttcattcttcatgtttt 229  Q
    |||||||||||||||| |||||||| | |  || | |||||||| || ||| ||| |||||||| ||||||||||||||||||    
T  7597380 aaatcgtggcacaattggtgaaaatcggggcacaatttttctcgagatttgagcactatataaggcttcattcttcatgtttt 7597462  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 8153572 - 8153622
Alignment:
Q  179 acgattttctcgggacttgtgcattatataagacttcattcttcatgtttt 229  Q
    |||||||||||||  ||||| ||||||| ||| ||||||||||||||||||    
T  8153572 acgattttctcggatcttgtacattataaaaggcttcattcttcatgtttt 8153622  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 3232145 - 3232092
Alignment:
Q  203 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 256  Q
    |||||||| |||||||||||||||||| |||||||| | |||||  ||||||||    
T  3232145 tatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaactt 3232092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 8863333 - 8863409
Alignment:
Q  179 acgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 256  Q
    ||||||||||| |  | |||||| |||||||| ||||||||||||||||||  || |||||||||||| || ||||||    
T  8863333 acgattttctcagatcatgtgcactatataaggcttcattcttcatgttttgggt-gagcttcaagagagaaaaactt 8863409  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 18141659 - 18141706
Alignment:
Q  207 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaact 255  Q
    |||| ||||||||||||| |||| |||||||||||||||| ||||||||    
T  18141659 taaggcttcattcttcat-ttttgagtagagcttcaagagagagaaact 18141706  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 179 - 294
Target Start/End: Original strand, 4560904 - 4561021
Alignment:
Q  179 acgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatca-aggaggtaactt 277  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| || | | ||||||||| || |||||| ||  |||| ||||| ||||||    
T  4560904 acgattttctcgggacttgtgcattgtataagacttcattcttcatgtttttagaataacttcaagagagaaaaacttaggaaatcagaggagataactt 4561003  T
Q  278 tag-gttgaatgtctttg 294  Q
    ||| ||||| ||||||||    
T  4561004 tagagttgagtgtctttg 4561021  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 28671797 - 28671841
Alignment:
Q  212 cttcattcttcatgttttaagtagagcttcaagagtgagaaactt 256  Q
    |||||||||||||||||| ||||| |||||||||| |||||||||    
T  28671797 cttcattcttcatgttttgagtagggcttcaagagagagaaactt 28671841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 296
Target Start/End: Original strand, 11067134 - 11067221
Alignment:
Q  211 acttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtctttgat 296  Q
    |||||||||||||| |||| || || |||||||||| ||||||||  ||  ||| ||||||||||||||| |||||| ||||||||||    
T  11067134 acttcattcttcattttttgaggagggcttcaagagagagaaactagggaaatcaaaggaggtaactttatggttgattgtctttgat 11067221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 36773387 - 36773462
Alignment:
Q  207 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 281  Q
    |||||||||||||||||| ||||   |||||||||||||| ||||||||  ||  ||| |||||||||||||||||    
T  36773387 taagacttcattcttcattttttgtatagagcttcaagagagagaaactagggaaatcaaaggaggtaactttagg 36773462  T

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Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 280
Target Start/End: Complemental strand, 19933 - 19854
Alignment:
Q  200 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatcaaggaggtaactttag 280  Q
    ||||||||| ||||||||||||| |||||| ||||| |||||||||| | ||||||| ||  |||||||||||||||||||    
T  19933 cattatatatgacttcattcttcttgttttgagtag-gcttcaagagagtgaaacttgggaaatcaaggaggtaactttag 19854  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 21704225 - 21704109
Alignment:
Q  141 taacttgaaatcgtggcacaattagtgaaaattgtgatacgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtaga-gct 239  Q
    |||| |||||||||||||| |||||  ||||||| |  ||||||||  | |||| |||||| ||| |||||||||||| ||||||||||  ||||| |||    
T  21704225 taacgtgaaatcgtggcacgattaggtaaaattggggcacgattttgacaggacatgtgcactatttaagacttcatttttcatgttttgtgtagaggct 21704126  T
Q  240 tcaagagtgagaaactt 256  Q
    ||||||| |||||||||    
T  21704125 tcaagagagagaaactt 21704109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 3739511 - 3739397
Alignment:
Q  141 taacttgaaatcgtggcacaattagtgaaaattgtgatacgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagctt 240  Q
    |||| ||||||||||||| |||  ||| |||| | |  ||||||||  |||||| |||||||||| ||||||||||||||||||||||| |||| |  ||    
T  3739511 taacgtgaaatcgtggcaaaatgtgtgtaaatcgaggcacgattttgacgggacatgtgcattatttaagacttcattcttcatgttttgagtaca-ttt 3739413  T
Q  241 caagagtgagaaactt 256  Q
    |||||| |||||||||    
T  3739412 caagagagagaaactt 3739397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 294
Target Start/End: Original strand, 6677306 - 6677394
Alignment:
Q  207 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtctttg 294  Q
    |||| |||||||||||||||||| ||||| |||||||||  |||||| || ||||||| ||||||||||||||| |||||| ||||||||    
T  6677306 taaggcttcattcttcatgttttgagtag-gcttcaagaaagagaaatttagggtatcaaaggaggtaactttagggttgagtgtctttg 6677394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 281
Target Start/End: Complemental strand, 36463738 - 36463657
Alignment:
Q  200 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatca-aggaggtaactttagg 281  Q
    |||||| |||| ||||||||||||| |||| |||||||||||||||| || |||||| ||  |||| ||||||||||||||||    
T  36463738 cattatttaaggcttcattcttcat-ttttgagtagagcttcaagagagaaaaacttgggaaatcataggaggtaactttagg 36463657  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 4587792 - 4587835
Alignment:
Q  203 tatataagacttcattcttcatgttttaagtagagcttcaagag 246  Q
    |||| |||||||||||||||||||||| || |||||||||||||    
T  4587792 tataaaagacttcattcttcatgttttgaggagagcttcaagag 4587835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 43208207 - 43208174
Alignment:
Q  201 attatataagacttcattcttcatgttttaagta 234  Q
    ||||||||||||||||||||||||||||| ||||    
T  43208207 attatataagacttcattcttcatgttttgagta 43208174  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 8871390 - 8871315
Alignment:
Q  207 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 281  Q
    |||| ||||||||||||||||||  ||||||||||||||| ||||||||  || |||| ||| |||||||||||||    
T  8871390 taaggcttcattcttcatgtttttggtagagcttcaagagagagaaactagggatatcaaagcaggtaactttagg 8871315  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 2263327 - 2263271
Alignment:
Q  195 ttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgaga 251  Q
    ||||||| |||||||| ||||||||||||||||||  ||||||| ||||||| ||||    
T  2263327 ttgtgcactatataaggcttcattcttcatgttttgtgtagagcgtcaagagagaga 2263271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 28265898 - 28265821
Alignment:
Q  205 tataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 281  Q
    |||||| ||||||||||||| ||||  | ||||||||||||| ||||||||  ||  ||| |||||||||||||||||    
T  28265898 tataaggcttcattcttcattttttgggaagagcttcaagagagagaaactagggaaatcaaaggaggtaactttagg 28265821  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 25116407 - 25116455
Alignment:
Q  181 gattttctcgggacttgtgcattatataagacttcattcttcatgtttt 229  Q
    ||||||||| || | |||||| |||||||| ||||||||||||||||||    
T  25116407 gattttctcaggtcatgtgcactatataagtcttcattcttcatgtttt 25116455  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 296
Target Start/End: Original strand, 49918210 - 49918278
Alignment:
Q  230 aagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtctttgat 296  Q
    ||||||||||| ||||| ||||||||| ||  ||| ||||||||||||||| ||||||| |||||||||    
T  49918210 aagtagagcttgaagagagagaaacttgggaaatcaaaggaggtaactttagggttgaaggtctttgat 49918278  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 5611524 - 5611451
Alignment:
Q  182 attttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 256  Q
    ||||||||| | ||||| ||| || ||||||||||||||||||||||| |  ||||||||||||| |||||||||    
T  5611524 attttctcgagtcttgtacataatttaagacttcattcttcatgttttga-aagagcttcaagagagagaaactt 5611451  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 21156811 - 21156738
Alignment:
Q  182 attttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 256  Q
    ||||||||| | ||||| ||| || ||||||||||||||||||||||| |  ||||||||||||| |||||||||    
T  21156811 attttctcgagtcttgtacataatttaagacttcattcttcatgttttga-aagagcttcaagagagagaaactt 21156738  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 40519532 - 40519479
Alignment:
Q  203 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 256  Q
    |||||||| |||||||| |||||| || |||||||||||||||| |||||||||    
T  40519532 tatataaggcttcattcatcatgtattgagtagagcttcaagagagagaaactt 40519479  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 2075403 - 2075350
Alignment:
Q  203 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 256  Q
    |||||||| |||||||||||||||||| |||   |||||||||| |||||||||    
T  2075403 tatataaggcttcattcttcatgttttgagtgaggcttcaagagagagaaactt 2075350  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 9666797 - 9666754
Alignment:
Q  207 taagacttcattcttcatgttttaagtagagcttcaagagtgaga 251  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||    
T  9666797 taagacttcattcttcat-ttttgagtagagcttcaagagagaga 9666754  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 37761820 - 37761765
Alignment:
Q  200 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 256  Q
    ||||||||||||||| |||||||||||||| ||| | |||||||||| ||| |||||    
T  37761820 cattatataagactttattcttcatgtttttagttg-gcttcaagagagagtaactt 37761765  T

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