View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17311_low_2 (Length: 401)
Name: NF17311_low_2
Description: NF17311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17311_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 42314366 - 42314750
Alignment:
| Q |
1 |
tcttttttggattgttagggaactagtctttcatctaaggacttgccaacacacaaattctatcctttgattagtggtgaacaaggaaaacatttctatg |
100 |
Q |
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| T |
42314366 |
tcttttttggattgttagggaactagtctttcatctaaggacttgccaacacacaaattctatcctttgattagtggtgaacaaggaaaacatttctatg |
42314465 |
T |
|
| Q |
101 |
ctctatctagggatgcgtgagggaaatttctccaagtttatttgccaatgattttgtttatctgttaaaactaagaagattgtttcatatgcattgttgc |
200 |
Q |
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| T |
42314466 |
ctctatctagggatgcgtgagtgaaatttctccaagtttatttgccaatgattttgtttatctgttaaaactaagaagattgtttcatatgcattgttgc |
42314565 |
T |
|
| Q |
201 |
aggaagttctgcagatatggaacacttgatgttgaaaaggtgaggggaaaaatagttgtttgccttgaagatgtgtactttggaactattccaggtccag |
300 |
Q |
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| T |
42314566 |
aggaagttctgcagatatggaacacttgatgttgaaaaggtgaggggaaaaatagttgtttgccttgaagatgtgtactttggaactattccaggtccag |
42314665 |
T |
|
| Q |
301 |
aagcttcttctgcaggagcagtaggaatgattttggccagtgatgatgaaagttattatgattttattgcttaccctcatgcttt |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42314666 |
aagcttcttctgcaggagcagtaggaatgattttggccagtgatgatgaaagttattatgattttattgcttaccctcatgcttt |
42314750 |
T |
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