View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17312_high_1 (Length: 823)
Name: NF17312_high_1
Description: NF17312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17312_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 774; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 774; E-Value: 0
Query Start/End: Original strand, 6 - 808
Target Start/End: Original strand, 34172895 - 34173697
Alignment:
| Q |
6 |
gtccaagaatatatttgtcattttcatgtcgtttgtatgagaaagatgctgtactaataagaatcatccaaataaattcttccaaatgcataactcattt |
105 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34172895 |
gtccaacaatatatttgtcattttcatgtcgtttgtatgagaaagatgctgtactaataagaatcatccaaataaattcttccaaatgcataactcattt |
34172994 |
T |
|
| Q |
106 |
ggtaaaaagttgcagaaatatttgatatgttgggcgattcattcccaccctatgagtataaaaagttaccttcttcccacgaatgacagctccaggctct |
205 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34172995 |
ggtaaaaagttgcagaaacatttgatatgttgggcgattcattcccaccctatgagtataaaaagttaccttcttcccacgaatgacagctccaggctct |
34173094 |
T |
|
| Q |
206 |
ccttgaataaccatgtacttgatttccccaaggtgcatgccagtaggtgcaagatgtcctggttcgtcgaaatctttcatgataccagtaatctcatcag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34173095 |
ccttgaataaccatgtacttgatttccccaaggtgcatgccagtaggtgcaagatgtcctggttcgtcgaaatctttcatgataccagtaatctcatcag |
34173194 |
T |
|
| Q |
306 |
gcttaaactgtaaaaagaagcataaaacaaatcaatgcacttcaaaagcacacaggtctcacatataaacaaaatcatcacacaaataagacctaaaaga |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34173195 |
gcttaaactgtaaaaagaagcataaaacaaatcaatgcacttcaaaagcacacaggtctcacatataaacaaaatcatcacacaaataagacctaaaaga |
34173294 |
T |
|
| Q |
406 |
tacaatgttctcgagtttcattgcaatgttgacaagtagttagtcatgataagtgtttattctgtaaactgcaaataatatgtttatccaaacatgaccc |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34173295 |
tacaatgttctcgagtttcattgcaatgttgacaagtagttagtcatgataagtgtttattctgtaaactgcaaataatatgtttatccaaacatgaccc |
34173394 |
T |
|
| Q |
506 |
taatcttatagcttctcaaatcagaaatgtaattctcgtattatcaactcaatttgacacaaagaaacgaacagatcctaacacctatagcacaatttgt |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34173395 |
taatcttatagcttctcaaatcagaaatgtaattctcgtattatcaactcaatttgacacaaagaaacgaacagatcctaacacctatagcacaatttgt |
34173494 |
T |
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| Q |
606 |
ctaagatttcgtctttactcttgtcgaaataatcgttactagaacggttatagcatacacaaatnnnnnnntgattaaatcgatagattgatcaatctat |
705 |
Q |
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| T |
34173495 |
ctaagatttcgtctttactcttgtcgaaataatcgttactagaacggttatagcatacacaaataaaaaaatgattaaatcgatagattgatcaatctat |
34173594 |
T |
|
| Q |
706 |
aaatcaaataaaagtaatgttcacgatgtgatattgaaaagccacatgtctcaaatgtgaattaaaatttgaaacaaaatattaaatcaagatgaaaata |
805 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34173595 |
aaatcaaataaaagtaatgttcacgatgtgatattgaaaagccacatgtctcaaatgtgaattaaaatttgaaacaaaatattaaatcaagatgaaaata |
34173694 |
T |
|
| Q |
806 |
gtt |
808 |
Q |
| |
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||| |
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| T |
34173695 |
gtt |
34173697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 171 - 320
Target Start/End: Complemental strand, 43051827 - 43051678
Alignment:
| Q |
171 |
ttaccttcttcccacgaatgacagctccaggctctccttgaataaccatgtacttgatttccccaaggtgcatgccagtaggtgcaagatgtcctggttc |
270 |
Q |
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|||||||||||||||| |||||||| |||| ||||||||| || |||||||| |||| | | ||||||||| ||| ||||| |||||||| || ||||| |
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| T |
43051827 |
ttaccttcttcccacggatgacagcaccagactctccttggatgaccatgtatttgactcctgcaaggtgcaagcccgtaggagcaagatgaccaggttc |
43051728 |
T |
|
| Q |
271 |
gtcgaaatctttcatgataccagtaatctcatcaggcttaaactgtaaaa |
320 |
Q |
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||| ||||||||||| ||| |||| |||| | |||||||| ||| |||| |
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| T |
43051727 |
gtcaaaatctttcataatatcagtgttctcttgaggcttaatctgaaaaa |
43051678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 43055579 - 43055532
Alignment:
| Q |
172 |
taccttcttcccacgaatgacagctccaggctctccttgaataaccat |
219 |
Q |
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|||||||||||| ||||||||||||||||| || |||||||| ||||| |
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| T |
43055579 |
taccttcttccctcgaatgacagctccaggttcaccttgaatcaccat |
43055532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 449 - 499
Target Start/End: Complemental strand, 33128678 - 33128628
Alignment:
| Q |
449 |
tcatgataagtgtttattctgtaaactgcaaataatatgtttatccaaaca |
499 |
Q |
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||||||||||||||| | |||||| |||||||||| |||||||||||||| |
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| T |
33128678 |
tcatgataagtgtttgtgctgtaagctgcaaataagctgtttatccaaaca |
33128628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 449 - 499
Target Start/End: Complemental strand, 34290170 - 34290120
Alignment:
| Q |
449 |
tcatgataagtgtttattctgtaaactgcaaataatatgtttatccaaaca |
499 |
Q |
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|||| ||||| |||||| ||||||| ||||||||| ||||||||||||||| |
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| T |
34290170 |
tcataataagcgtttatgctgtaaattgcaaataagatgtttatccaaaca |
34290120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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