View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17313_high_2 (Length: 271)
Name: NF17313_high_2
Description: NF17313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17313_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 26721672 - 26721918
Alignment:
| Q |
7 |
aacaacaagaaatcagttaaactagttctctcactaggtattcaaattctcgatgagaattactctttaggaaaatctattacaattaaccaaatcctta |
106 |
Q |
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|||||||||||||||||||| |||| ||||||||||||| ||||||||| || ||||| |||||||||||||||||| | |||| |||||||||||||| |
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| T |
26721672 |
aacaacaagaaatcagttaacctagctctctcactaggttctcaaattcttgacgagaaatactctttaggaaaatctctcacaactaaccaaatcctta |
26721771 |
T |
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| Q |
107 |
aactcgcatcgaaaggacaacaacaaaacgccatcaacgttgttctaacggcagctgatgtgttagttgatggtttttgttcaagtaggtgtggaaccca |
206 |
Q |
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| T |
26721772 |
atctcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttcaagtaggtgtggaaccca |
26721871 |
T |
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| Q |
207 |
tggttcttcttatggtgcacgcgtaaacggaaagagaaacaagttcg |
253 |
Q |
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| T |
26721872 |
tggttcttcttatggtgcacgcgtaaatggaaagagaaacaagttcg |
26721918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 26991421 - 26991667
Alignment:
| Q |
7 |
aacaacaagaaatcagttaaactagttctctcactaggtattcaaattctcgatgagaattactctttaggaaaatctattacaattaaccaaatcctta |
106 |
Q |
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|||||||||||||||||||| |||| ||||||||||||| ||||||||| || ||||| |||||||||||||||||| | |||| |||||||||||||| |
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| T |
26991421 |
aacaacaagaaatcagttaacctagctctctcactaggttctcaaattcttgacgagaaatactctttaggaaaatctctcacaactaaccaaatcctta |
26991520 |
T |
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| Q |
107 |
aactcgcatcgaaaggacaacaacaaaacgccatcaacgttgttctaacggcagctgatgtgttagttgatggtttttgttcaagtaggtgtggaaccca |
206 |
Q |
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| T |
26991521 |
atctcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttcaagtaggtgtggaaccca |
26991620 |
T |
|
| Q |
207 |
tggttcttcttatggtgcacgcgtaaacggaaagagaaacaagttcg |
253 |
Q |
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| T |
26991621 |
tggttcttcttatggtgcacgcgtaaatggaaagagaaacaagttcg |
26991667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 27002385 - 27002637
Alignment:
| Q |
1 |
ctcgccaacaacaagaaatcagttaaactagttctctcactaggtattcaaattctcgatgagaattactctttaggaaaatctattacaattaaccaaa |
100 |
Q |
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||||| ||||| |||||||||||||| |||| ||||||||||||| |||||||||| ||||||||||||| |||||||||||| | |||| |||||||| |
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| T |
27002385 |
ctcgcgaacaataagaaatcagttaacctagctctctcactaggttctcaaattctcaatgagaattactcattaggaaaatctctcacaactaaccaaa |
27002484 |
T |
|
| Q |
101 |
tccttaaactcgcatcgaaaggacaacaacaaaacgccatcaacgttgttctaacggcagctgatgtgttagttgatggtttttgttcaagtaggtgtgg |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27002485 |
tccttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagccgctgatgtgttagttgacggtttttgttcaagtaggtgtgg |
27002584 |
T |
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| Q |
201 |
aacccatggttcttcttatggtgcacgcgtaaacggaaagagaaacaagttcg |
253 |
Q |
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||| |||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
27002585 |
aacacatggttcttcttatggtgcactcgtaaatggaaagagaaacaagttcg |
27002637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 26996116 - 26996362
Alignment:
| Q |
7 |
aacaacaagaaatcagttaaactagttctctcactaggtattcaaattctcgatgagaattactctttaggaaaatctattacaattaaccaaatcctta |
106 |
Q |
| |
|
|||||||||||||||||||| |||| ||| |||||||||| ||||||| | || ||||| |||||||||||||||||| | |||| |||||||||||||| |
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| T |
26996116 |
aacaacaagaaatcagttaacctagctctatcactaggtactcaaattttggacgagaaatactctttaggaaaatctctcacaactaaccaaatcctta |
26996215 |
T |
|
| Q |
107 |
aactcgcatcgaaaggacaacaacaaaacgccatcaacgttgttctaacggcagctgatgtgttagttgatggtttttgttcaagtaggtgtggaaccca |
206 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26996216 |
aactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagccgctgatgtgttagttgacggtttttgttcaagtaggtgtggaaccca |
26996315 |
T |
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| Q |
207 |
tggttcttcttatggtgcacgcgtaaacggaaagagaaacaagttcg |
253 |
Q |
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| T |
26996316 |
tggttcttcttatggtgcacgcgtgaatggaaagagaaacaagttcg |
26996362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 33821285 - 33821368
Alignment:
| Q |
132 |
aaacgccatcaacgttgttctaacggcagctgatgtgttagttgatggtttttgttcaagtaggtgtggaacccatggttcttc |
215 |
Q |
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||||||||||||||||||||| || | ||||| ||| |||||||||| |||||||| ||||| ||||| || ||||||||||| |
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| T |
33821285 |
aaacgccatcaacgttgttctcacttcggctgacgtggtagttgatgggttttgttccagtagatgtgggacacatggttcttc |
33821368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 33811170 - 33811204
Alignment:
| Q |
49 |
caaattctcgatgagaattactctttaggaaaatc |
83 |
Q |
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| T |
33811170 |
caaattctcgatgagaattactcattaggaaaatc |
33811204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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