View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17313_low_1 (Length: 329)
Name: NF17313_low_1
Description: NF17313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17313_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 4670545 - 4670805
Alignment:
| Q |
18 |
atataagcaaaataggaattgaaaacaatataatatgtattctactattacatataatacacatgatgattattttaaattcaacaaatgcacagctaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4670545 |
atataagcaaaataggaattgaaaacaatataatatgtattctactattacatataatacagatgatgattattttaaattcaacaaatacacagctaat |
4670644 |
T |
|
| Q |
118 |
atttgataatatatcagacacattataaaaaatacaaacaatctatttgagcactattatagttataaactgaaattaaaagaaatcaactaaaagagca |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
4670645 |
atttgataatataccagacacattataaaaaatacaaacaatctatttgagcactattatagttataaattgaaattaaaagaaataaactaaaagagca |
4670744 |
T |
|
| Q |
218 |
tatccaacttacatattgaaacaaccttggcattttacatcctgcaataaaagagagaaaa |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4670745 |
tatccaacttacatattgaaacaaccttggcattttacatcctgcaataaaagagataaaa |
4670805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University