View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17314_high_1 (Length: 580)
Name: NF17314_high_1
Description: NF17314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17314_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 112 - 573
Target Start/End: Original strand, 17732443 - 17732904
Alignment:
| Q |
112 |
aagaagaagaaaatggtaacatttacgatttgaaaagaacaaacaatccaaagtacgtctacacacgataacttcgtacaccgtaacacacatgattatc |
211 |
Q |
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| T |
17732443 |
aagaagaagaaaagggtaacatttacgatttgaaaagaacaaacaatccaaagtacgtctacacacgataacttcgtacaccgtaacacacatgattatc |
17732542 |
T |
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| Q |
212 |
cgatatttttcctcttgttcgcatgattctggaacctgcaaacaaaacaattttcaacatnnnnnnnnnnnnnnnnnnttggaaccttcctccttctgtg |
311 |
Q |
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| T |
17732543 |
cgatatttttcctcttgttcgcatgattctggaacctgcaaacaaaacaattttcaacattctctctcttctctctctttggaaccttcctccttctgtg |
17732642 |
T |
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| Q |
312 |
gaaaaacctaatccaatatttaattcgcttctcattggttttgggttttcttcaatcattcattcatccaaaccttgaaggaacaaggagagagaaagaa |
411 |
Q |
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| T |
17732643 |
gaaaaacctaatccaatatttaattcgcttctcgttggttttgggttttcttcaatcattcattcatccaaaccttgaaggaacaaggagagagaaagaa |
17732742 |
T |
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| Q |
412 |
agaatttcaattttaagggttagggttaaagattaagtggagagagaatttcatttattttttctgaaattgatgcaaattttgggttttgtgggttatt |
511 |
Q |
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| T |
17732743 |
agaatttcaattttaagggttagggttaaagattaagtggagagagaatttcatttattttttctgaaattgatgcaaattttgggttttgtgggttatt |
17732842 |
T |
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| Q |
512 |
tataaatcaaatcaaggaaaaagatttgattttttcatctgggtgtgtgagaaatgatgatg |
573 |
Q |
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| T |
17732843 |
tataaatcaaatcaaggaaaaagatttgattttttcatctgggtgtgtgagaaatgatgatg |
17732904 |
T |
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