View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17314_high_13 (Length: 241)
Name: NF17314_high_13
Description: NF17314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17314_high_13 |
 | |
|
| [»] scaffold0394 (1 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 16547691 - 16547468
Alignment:
| Q |
1 |
catcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16547691 |
catcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgc |
16547592 |
T |
|
| Q |
101 |
gacaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16547591 |
gacaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcat |
16547492 |
T |
|
| Q |
201 |
cttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
16547491 |
cttaaacttgagtgatagtaattg |
16547468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 17830618 - 17830840
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17830618 |
atcatcatggtgaatgattgtattttcatcttcataaagactgaaatcaacatccatttcagcactccttctaataaagttgtgtattgtcattgttgcg |
17830717 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17830718 |
acaactatatgaacctgtgtctcatatttgaactgaggcatgcgatgcaaaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
17830817 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
17830818 |
ttaaacttgagtggtagtaattg |
17830840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 21515552 - 21515773
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||||| ||||||||||| ||| |||| | |||||| |||||||||||||| |||||||||||| |
|
|
| T |
21515552 |
atcatcatggtgaatgatcgtgctttaatcttcataaacattaaaatcaatatcaatttatgacttccttcggataaagttgtgtatagccattgttgcg |
21515651 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||| ||||||||||||||| |||| || |||||||||| ||| || ||||||||| | |||||||||||||||||||||||||| |||||||| | |
|
|
| T |
21515652 |
acaactatttgaacttgtgtctcaaatttaaagttaggcatgcgacgtaggattgcaaatatgttcttccataccccaaaagttctttctattgtgcacc |
21515751 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
21515752 |
ttaaacttgagtgataataatt |
21515773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 30019454 - 30019233
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||||||| ||||||||| | ||| |||| || |||||| |||||||||||||| |||||||||||| |
|
|
| T |
30019454 |
atcatcatgatgaatgactgtgctatcatcttcataaacattaaaatccatatcattttctgccttccttcggataaagttgtgtatagccattgttgcg |
30019355 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||| |||||||| |||||| |||| ||||||||||| | ||| || ||||||||| | |||||||||||||||||||||||||| |||||||| | |
|
|
| T |
30019354 |
acaactatttgaacttgagtctcaaatttaaacttaggcattcgacgtaggattgcaaatatgttcttccataccccaaaagttctttctattgtgcacc |
30019255 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
||||||| |||||||| ||||| |
|
|
| T |
30019254 |
ttaaactagagtgataataatt |
30019233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 22481750 - 22481527
Alignment:
| Q |
1 |
catcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22481750 |
catcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgc |
22481651 |
T |
|
| Q |
101 |
gacaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22481650 |
gacaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcat |
22481551 |
T |
|
| Q |
201 |
cttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
22481550 |
cttaaacttgagtgatagtaattg |
22481527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 33232691 - 33232470
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| ||||||||||| ||| ||||| | |||||| |||||||||||||| |||||||||||| |
|
|
| T |
33232691 |
atcatcatggtgaatgatcgtgctttcatcttcataaacattaaaatcaatatcaatttctggcttccttcggataaagttgtgtatagccattgttgcg |
33232592 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||| ||||||||||||||| |||| || |||||||||| ||| || ||||||||||| |||||||||||||||||||||||||| |||||||| | |
|
|
| T |
33232591 |
acaactatttgaacttgtgtctcaaatttaaagttaggcatgcgacgtaggattgcaaatctgttcttccataccccaaaagttctttctattgtgcacc |
33232492 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
33232491 |
ttaaacttgagtgataataatt |
33232470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 16842046 - 16841832
Alignment:
| Q |
10 |
ggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcgacaactat |
109 |
Q |
| |
|
||||| |||||||||||||||||| ||||| |||||||||||||| || || | || | ||| |||||||||||||||||| ||||||||||||||| || |
|
|
| T |
16842046 |
ggtgattgactgtattttcatcttgataaatattaaaatcaacatgcaatttaacatttcttataataaagttgtgtattgtcattgttgcgacaacgat |
16841947 |
T |
|
| Q |
110 |
atgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaactt |
209 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||| ||||| ||| |||||||||| ||||||||| |||||| |||||||||||||||| |||||||| |
|
|
| T |
16841946 |
atgaacttatgtctcatatttaaacttaggcatgcaacgcaaaatagcaaatctatgcttccatactccaaaatatctttcaattgtgcattttaaactt |
16841847 |
T |
|
| Q |
210 |
gagtgatagtaattg |
224 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
16841846 |
gagtcgtagtaattg |
16841832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 7071881 - 7072102
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| |||||||| || ||| ||||| || |||||| |||||||||||||| |||||||||||| |
|
|
| T |
7071881 |
atcatcatggtgaatggtcgtgctttcatcttcataaacattaaaattaatatcaatttctgccttccttcggataaagttgtgtatagccattgttgcg |
7071980 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||| ||||||||||||||| |||| || |||||||||| ||| || ||||||||| | |||||||||||||||||||||||||| |||||||| | |
|
|
| T |
7071981 |
acaactatttgaacttgtgtctcaaatttaaagttaggcatgcgacgtaggattgcaaatatgttcttccataccccaaaagttctttctattgtgcacc |
7072080 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
||||| |||||||||| ||||| |
|
|
| T |
7072081 |
ttaaatttgagtgataataatt |
7072102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 27738412 - 27738596
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| ||||||||||| ||| ||||| || |||||| |||||||||||||| |||||||||||| |
|
|
| T |
27738412 |
atcatcatggtgaatgatcgtgctttcatcttcataaacattaaaatcaatatcaatttctgccttccttcggataaagttgtgtatagccattgttgcg |
27738511 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttc |
186 |
Q |
| |
|
|||||||| ||||||||||||||| |||| || |||||||||| ||| || ||||||||||| |||||||||||||||||||||| |
|
|
| T |
27738512 |
acaactatttgaacttgtgtctcaaatttaaagttaggcatgcgacgtaggattgcaaatctgttcttccataccccaaaagttc |
27738596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 22810190 - 22809992
Alignment:
| Q |
26 |
ttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcgacaactatatgaacttgtgtctca |
125 |
Q |
| |
|
|||||| ||||| |||| ||||| || ||||| |||||| |||||||||||||||| ||||| ||||||||||| ||||| | | ||||||||||| | |
|
|
| T |
22810190 |
ttcatcctcataccgattgaaatcgacgtccatatcagcattccttctaataaagttatgtatagccattgttgcaacaacgacttcaacttgtgtctta |
22810091 |
T |
|
| Q |
126 |
tatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
| |||| |||| ||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
22810090 |
attgtgaatttagtcatgcgtcgtagaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagtgataataattg |
22809992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 21022338 - 21022255
Alignment:
| Q |
79 |
agttgtgtattgccattgttgcgacaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatc |
162 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||| |||| || |||| ||||| ||| || |||||||||| |
|
|
| T |
21022338 |
agttgtgtatagccattgttgcgacaactatttgaacttgtgtctcaaatttaaagttagccatgcgacgtaggattgcaaatc |
21022255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 16565774 - 16565551
Alignment:
| Q |
1 |
catcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16565774 |
catcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgc |
16565675 |
T |
|
| Q |
101 |
gacaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16565674 |
gacaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcat |
16565575 |
T |
|
| Q |
201 |
cttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
16565574 |
cttaaacttgagtgatagtaattg |
16565551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 15619076 - 15618856
Alignment:
| Q |
5 |
atcatggtgaatgactgtattt-tcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcgac |
103 |
Q |
| |
|
|||||||||||||| ||||| | | ||||||||||||||| |||||||||||||||||| || ||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
15619076 |
atcatggtgaatgattgtatatctaatcttcataaagattgaaatcaacatccatttcaccaatccttctcataaagttgtgtattgccattgtttggac |
15618977 |
T |
|
| Q |
104 |
aactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatctt |
203 |
Q |
| |
|
||| ||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
15618976 |
aacgatatgaacttgcttttcatatttgaacttaggcatgtgacgcagaattgcaaatctattcttccataccccaaaagttttttcaattgtgcatcct |
15618877 |
T |
|
| Q |
204 |
aaacttgagtgatagtaattg |
224 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
15618876 |
aaacttgagtgatagtaattg |
15618856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 56560742 - 56560521
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| ||||||||||| ||| ||||| || |||||| |||||||||||||| |||||||||||| |
|
|
| T |
56560742 |
atcatcatggtgaatgatcgtgctttcatcttcataaacattaaaatcaatatcaatttctgccttccttcggataaagttgtgtatagccattgttgcg |
56560643 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||| ||||||||||||||| |||| || |||||||||| ||| || ||||||||||| |||||||||||||||||||||||||| |||||||| | |
|
|
| T |
56560642 |
acaactatttgaacttgtgtctcaaatttaaagttaggcatgcgacgtaggattgcaaatctgttcttccataccccaaaagttctttctattgtgcacc |
56560543 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
56560542 |
ttaaacttgagtgataataatt |
56560521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 24036063 - 24036284
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||||||||| ||||||||| | ||| |||| ||| |||||| |||||||||||||| |||||||||||| |
|
|
| T |
24036063 |
atcatcatgatgaatgattgtgctttcatcttcataaacattaaaatccatatcattttctgcattccttcggataaagttgtgtatagccattgttgcg |
24036162 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||| |||||||| |||||| |||| ||||||||||| | ||| || ||||||||||| |||||||||||||||||||||||||| |||||||| | |
|
|
| T |
24036163 |
acaactatttgaacttgagtctcaaatttaaacttaggcattcgacgtaggattgcaaatctgttcttccataccccaaaagttctttctattgtgcacc |
24036262 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
||||||| |||||||| ||||| |
|
|
| T |
24036263 |
ttaaactagagtgataataatt |
24036284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 22698939 - 22698741
Alignment:
| Q |
26 |
ttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcgacaactatatgaacttgtgtctca |
125 |
Q |
| |
|
|||||| ||||| |||| ||||| || ||||| |||||| |||||||||||||||| ||||| ||||||||||| ||||| | | ||||||||||| | |
|
|
| T |
22698939 |
ttcatcctcataccgattgaaatcgacgtccatatcagcattccttctaataaagttatgtatagccattgttgcaacaacaacttcaacttgtgtctta |
22698840 |
T |
|
| Q |
126 |
tatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
| |||| |||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
22698839 |
attgtgaatttaggcatgcgtcgtagaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagtgataataattg |
22698741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 22981591 - 22981789
Alignment:
| Q |
26 |
ttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcgacaactatatgaacttgtgtctca |
125 |
Q |
| |
|
|||||| ||||| |||| ||||| || ||||| |||||| |||||||||||||||| ||||| ||||||||||| ||||| | | ||||||||||| | |
|
|
| T |
22981591 |
ttcatcctcataccgattgaaatcgacgtccatatcagcattccttctaataaagttatgtatagccattgttgcaacaacaacttcaacttgtgtctta |
22981690 |
T |
|
| Q |
126 |
tatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
| |||| |||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
22981691 |
attgtgaatttaggcatgcgtcgtagaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagtgataataattg |
22981789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 22995178 - 22995376
Alignment:
| Q |
26 |
ttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcgacaactatatgaacttgtgtctca |
125 |
Q |
| |
|
|||||| ||||| |||| ||||| || ||||| |||||| |||||||||||||||| ||||| ||||||||||| ||||| | | ||||||||||| | |
|
|
| T |
22995178 |
ttcatcctcataccgattgaaatcgacgtccatatcagcattccttctaataaagttatgtatagccattgttgcaacaacaacttcaacttgtgtctta |
22995277 |
T |
|
| Q |
126 |
tatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
| |||| |||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
22995278 |
attgtgaatttaggcatgcgtcgtagaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagtgataataattg |
22995376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 28948363 - 28948538
Alignment:
| Q |
45 |
aaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcgacaactatatgaacttgtgtctcatatttgaacttaggcatgc |
144 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||| |||||||||| | ||| | ||||| ||||||| | | |||| |||||||||| |
|
|
| T |
28948363 |
aaatcaacatccatatcagcattccttctaataaagttgtgt----ccattgttgcaataaccacttgaacctgtgtcttaattgtgaatttaggcatgc |
28948458 |
T |
|
| Q |
145 |
tacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
28948459 |
gtcgtagaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagtgataataattg |
28948538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 52056842 - 52057039
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| |||| |||||| ||| |||| | |||||| ||||| |||||||| |||||||||||| |
|
|
| T |
52056842 |
atcatcatggtgaatgaacgtgctttcatcttcataaacattagaatcaaaatcaatttttgtcttccttcagataaatttgtgtatagccattgttgcg |
52056941 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgca |
199 |
Q |
| |
|
|||||||| ||||||||||||||| |||| || || | ||||| ||| || ||| ||||||| ||||||||||||| ||||||| |||| |||||||| |
|
|
| T |
52056942 |
acaactatttgaacttgtgtctcaaatttaaagttggacatgcgacgtaggatttcaaatctgttcttccataccctaaaagttatttctattgtgca |
52057039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 22703007 - 22703182
Alignment:
| Q |
45 |
aaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcgacaactatatgaacttgtgtctcatatttgaacttaggcatgc |
144 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||||||||||| |||||||||| | ||| | ||||| |||||| | | |||| |||||||||| |
|
|
| T |
22703007 |
aaatcaacatccatatcagcattcattctaataaagttgtgt----ccattgttgcaataaccacttgaacctgtgtcataattgtgaatttaggcatgc |
22703102 |
T |
|
| Q |
145 |
tacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||| |||||| |
|
|
| T |
22703103 |
gtcgtagaattgcaaatctattcttccatacaccaaaagttctttctattgggcaccttaaacttgagtgataataattg |
22703182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 22991110 - 22990935
Alignment:
| Q |
45 |
aaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcgacaactatatgaacttgtgtctcatatttgaacttaggcatgc |
144 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||||||||||| |||||||||| | ||| | ||||| |||||| | | |||| |||||||||| |
|
|
| T |
22991110 |
aaatcaacatccatatcagcattcattctaataaagttgtgt----ccattgttgcaataaccacttgaacctgtgtcataattgtgaatttaggcatgc |
22991015 |
T |
|
| Q |
145 |
tacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||| |||||| |
|
|
| T |
22991014 |
gtcgtagaattgcaaatctattcttccatacaccaaaagttctttctattgggcaccttaaacttgagtgataataattg |
22990935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 51806119 - 51805958
Alignment:
| Q |
29 |
atcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcgacaactatatgaacttgtgtctcatat |
128 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||| || |||||| |||||||||||| || |||||||||||| | ||||| | || || ||| | | || |
|
|
| T |
51806119 |
atcttcataaacattaaaatcaatatcaatttttgctttccttcgaataaagttgtgcatagccattgttgcggctactatttaaaattatgttttaaat |
51806020 |
T |
|
| Q |
129 |
ttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttc |
190 |
Q |
| |
|
||||||||| |||||| | | ||||| |||| ||||||||||| ||| |||||||||||| |
|
|
| T |
51806019 |
ttgaacttacgcatgcgttgtacaattgtaaatttattcttccatgcccaaaaagttctttc |
51805958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 46957554 - 46957492
Alignment:
| Q |
26 |
ttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtat |
88 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
46957554 |
ttcatcctcatatcgattgaaatcaacatccatatcagcattccttctaataaagttgtgtat |
46957492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 36311832 - 36311609
Alignment:
| Q |
1 |
catcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36311832 |
catcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgc |
36311733 |
T |
|
| Q |
101 |
gacaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36311732 |
gacaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcat |
36311633 |
T |
|
| Q |
201 |
cttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36311632 |
cttaaacttgagtgatagtaattg |
36311609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5916793 - 5917016
Alignment:
| Q |
1 |
catcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5916793 |
catcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgc |
5916892 |
T |
|
| Q |
101 |
gacaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5916893 |
gacaactatatgaacttgtgtctcatatttgaacttaggcatgctacgtagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcat |
5916992 |
T |
|
| Q |
201 |
cttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
5916993 |
cttaaacttgagtgatagtaattg |
5917016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 14036850 - 14036629
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||| ||||| || |||||| |||||||||||||| |||||||||||| |
|
|
| T |
14036850 |
atcatcatggtgaatgattgtgctttcatcttcataaacattaaaatcaatatcaatttctgccttccttcggataaagttgtgtatagccattgttgcg |
14036751 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||| ||||||||||||||| |||| || |||||||||| ||| || ||||||||||| |||||||||||||||||||||||||| |||||||| | |
|
|
| T |
14036750 |
acaactatttgaacttgtgtctcaaatttaaagttaggcatgcgacgtaggattgcaaatctgttcttccataccccaaaagttctttctattgtgcacc |
14036651 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
14036650 |
ttaaacttgagtgataataatt |
14036629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 13896233 - 13896012
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| ||||||||||| ||| ||||| || |||||| |||||||||||||| |||||||||||| |
|
|
| T |
13896233 |
atcatcatggtgaatgatcgtgctttcatcttcataaacattaaaatcaatatcaatttctgccttccttcggataaagttgtgtatagccattgttgcg |
13896134 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||| ||||||||||||||| |||| || |||||||||| ||| || ||||||||||| |||||||||||||||||||||||||| |||||||| | |
|
|
| T |
13896133 |
acaactatttgaacttgtgtctcaaatttaaagttaggcatgcgacgtaggattgcaaatctgttcttccataccccaaaagttctttctattgtgcacc |
13896034 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
13896033 |
ttaaacttgagtgataataatt |
13896012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 14380341 - 14380120
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| ||||||||| | ||| |||| || |||||| |||||||||||||| |||||||||||| |
|
|
| T |
14380341 |
atcatcatgatgaatgactgtgctttcatcttcataaacattaaaatccatatcattttctgccttccttcggataaagttgtgtatagccattgttgcg |
14380242 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||| |||||||| |||||| |||| ||||||||||| | ||| || ||||||||||| |||||||||||||||||||||||||| |||||||| | |
|
|
| T |
14380241 |
acaactatttgaacttgagtctcaaatttaaacttaggcattcgacgtaggattgcaaatctgttcttccataccccaaaagttctttctattgtgcacc |
14380142 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
||||||| |||||||| ||||| |
|
|
| T |
14380141 |
ttaaactagagtgataataatt |
14380120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 23360851 - 23361050
Alignment:
| Q |
26 |
ttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcgacaactatatgaacttgtgtctca |
125 |
Q |
| |
|
|||||| ||||| ||||| ||||| || ||||| |||||| |||||||||||||||| ||||| | ||||||||| |||| | | ||||||||||| | |
|
|
| T |
23360851 |
ttcatcctcatacagattgaaatcgacgtccatatcagcattccttctaataaagttatgtatagtcattgttgcagcaacgacttcaacttgtgtctta |
23360950 |
T |
|
| Q |
126 |
tatttgaacttaggcatgctacgcagaattgcaaatctattcttccatac-cccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
| |||| |||| ||||| || |||||||||||||||||||| ||||| || |||||||||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
23360951 |
attgtgaatttagtcatgcgtcgtagaattgcaaatctattctttcatacaccaaaaagttctttctattgtgcaccttaaacttgagtgataataattg |
23361050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 35569755 - 35569978
Alignment:
| Q |
1 |
catcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35569755 |
catcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactctttctaataaagttgtgtattgccattgttgc |
35569854 |
T |
|
| Q |
101 |
gacaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35569855 |
gacaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatttattcttccataccccaaaagttctttcaattgtgcat |
35569954 |
T |
|
| Q |
201 |
cttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
35569955 |
cttaaacttgagtgatagtaattg |
35569978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 46407722 - 46407501
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| ||||||||||| ||| ||||| || |||||| |||||||||||||| |||||||||||| |
|
|
| T |
46407722 |
atcatcatggtgaatgatcgtgctttcatcttcataaacattaaaatcaatatcaatttctgccttccttcggataaagttgtgtatagccattgttgcg |
46407623 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||| ||||||||||||||| |||| || |||||||||| ||| || ||||||||||| |||||||||||||||||||||||||| |||||||| | |
|
|
| T |
46407622 |
acaactatttgaacttgtgtctcaaatttaaagttaggcatgcgacgtaggattgcaaatctgttcttccataccccaaaagttctttctattgtgcacc |
46407523 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
46407522 |
ttaaacttgagtgataataatt |
46407501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 50978788 - 50979009
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| ||||||||| | ||| |||| || |||||| |||||||||||||| |||||||||||| |
|
|
| T |
50978788 |
atcatcatgatgaatgactgtgctttcatcttcataaacattaaaatccatatcattttctgccttccttcggataaagttgtgtatagccattgttgcg |
50978887 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||| |||||||| |||||| |||| ||||||||||| | ||| || ||||||||||| |||||||||||||||||||||||||| |||||||| | |
|
|
| T |
50978888 |
acaactatttgaacttgagtctcaaatttaaacttaggcattcgacgtaggattgcaaatctgttcttccataccccaaaagttctttctattgtgcacc |
50978987 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
||||||| |||||||| ||||| |
|
|
| T |
50978988 |
ttaaactagagtgataataatt |
50979009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 40 - 224
Target Start/End: Complemental strand, 4346181 - 4345997
Alignment:
| Q |
40 |
gattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcgacaactatatgaacttgtgtctcatatttgaacttagg |
139 |
Q |
| |
|
|||| ||||| |||||||| |||||| |||||||||||||||| ||||| ||||||||||| ||||| | | ||||||||||| | | |||| ||||| |
|
|
| T |
4346181 |
gattgaaatcgacatccatatcagcattccttctaataaagttatgtatagccattgttgcaacaacgacttcaacttgtgtcttaattgtgaatttagg |
4346082 |
T |
|
| Q |
140 |
catgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
4346081 |
catgcgtcgtagaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagtgataataattg |
4345997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 35606564 - 35606342
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaaga-ttaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgc |
100 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||| | |||||||||| ||| |||| | |||||| |||||||||||||| | ||||||||| |
|
|
| T |
35606564 |
atcatcatgatgaatgaacgtgctttcatcttcataaacaattaaaatcaatatcaatttttgtcttccttcggataaagttgtgtatagtcattgttgc |
35606465 |
T |
|
| Q |
101 |
gacaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcat |
200 |
Q |
| |
|
|||| |||| ||||||||||||| | |||| || |||||||||| | | || ||||||||||| |||||||||||||||| ||||||||| |||||||| |
|
|
| T |
35606464 |
gacagctatttgaacttgtgtcttaaatttaaagttaggcatgcgatgtaggattgcaaatctgttcttccataccccaacagttctttctattgtgcac |
35606365 |
T |
|
| Q |
201 |
cttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
35606364 |
cttaaacttgagtgataataatt |
35606342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 190
Target Start/End: Original strand, 50979027 - 50979063
Alignment:
| Q |
154 |
ttgcaaatctattcttccataccccaaaagttctttc |
190 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
50979027 |
ttgcaaatctgttcttccataccccaaaagttctttc |
50979063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 37638937 - 37638715
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37638937 |
atcatcattgtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
37638838 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37638837 |
acaaatatatgaacttaagtctcatatttgaacttaggcatacaacgcaaaattgcaaatctattcttccatacaccaaaagttctttcaattgtgcatc |
37638738 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
37638737 |
ttaaacttgagtgatagtaattg |
37638715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 10372565 - 10372785
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10372565 |
atcatcatggtgaatgattgtattttcattttcataaagattgaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
10372664 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10372665 |
acaattatatgaacttgtgtctcatgtttgaacttaggcatacgacgcaaaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
10372764 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaat |
222 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
10372765 |
ttaaacttgagtggtagtaat |
10372785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 12963470 - 12963315
Alignment:
| Q |
69 |
cttctaataaagttgtgtattgccattgttgcgacaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattct |
168 |
Q |
| |
|
|||||||||||||||||||||| | |||||| ||||||||| | ||||| ||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
12963470 |
cttctaataaagttgtgtattgtcgttgttgagacaactatttaaacttacgtctcatatttgaacttcagcatgcgacgcagaattgcaaatctattct |
12963371 |
T |
|
| Q |
169 |
tccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| |
|
|
| T |
12963370 |
tccataccccaaaagttctttcaattgtgaattttaaacttgagtggtagtaattg |
12963315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 6451 - 6673
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6451 |
atcatcatggtgaatgattgtattttcatcttcataaagattgaaatcaacatccatttcaacactccttctaataaagttgtgtattgtcattgttgcg |
6550 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6551 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgcaacgaaaaattaaaaatctattcttccataccccaaaagttctttcaattgtgcatc |
6650 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
6651 |
ttaaacttgagtggtagtaattg |
6673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 5 - 211
Target Start/End: Original strand, 16246668 - 16246878
Alignment:
| Q |
5 |
atcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattg-----ccattgttg |
99 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||||| |||||||||| ||||||||| |
|
|
| T |
16246668 |
atcatggtgaatgattgtaatttcatcttaataaagattgaaatcaacatccatttcagcattccatctaataaaattgtgtattgtcatgccattgttg |
16246767 |
T |
|
| Q |
100 |
cgacaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgca |
199 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
16246768 |
cgacaactatttgaacttgcctctcatatt-gaacttaggcatgcgacgtagaattgcaaatctattcttccatgccttaaaagttctttcaattgtgca |
16246866 |
T |
|
| Q |
200 |
tcttaaacttga |
211 |
Q |
| |
|
|||||||||||| |
|
|
| T |
16246867 |
tcttaaacttga |
16246878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 51125232 - 51125453
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| ||||||||| | ||| |||| || |||||| |||||||||||||| |||||||||||| |
|
|
| T |
51125232 |
atcatcatgatgaatgactgtgctttcatcttcataaacattaaaatccatatcattttctgccttccttcggataaagttgtgtatagccattgttgcg |
51125331 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||| |||||||| |||||| |||| ||||||||||| | ||| || ||||||||||| |||||||||||||||||||||||||| |||||||| | |
|
|
| T |
51125332 |
acaactatttgaacttgagtctcaaatttaaacttaggcattcgacgtaggattgcaaatctgttcttccataccccaaaagttctttctattgtgcacc |
51125431 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
||||||| |||||||| ||||| |
|
|
| T |
51125432 |
ttaaactagagtgataataatt |
51125453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 52692776 - 52692555
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| ||||||||| | ||| |||| || |||||| |||||||||||||| |||||||||||| |
|
|
| T |
52692776 |
atcatcatgatgaatgactgtgctttcatcttcataaacattaaaatccatatcattttctgccttccttcggataaagttgtgtatagccattgttgcg |
52692677 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||| |||||||| |||||| |||| ||||||||||| | ||| || ||||||||||| |||||||||||||||||||||||||| |||||||| | |
|
|
| T |
52692676 |
acaactatttgaacttgagtctcaaatttaaacttaggcattcgacgtaggattgcaaatctgttcttccataccccaaaagttctttctattgtgcacc |
52692577 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
||||||| |||||||| ||||| |
|
|
| T |
52692576 |
ttaaactagagtgataataatt |
52692555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 7011859 - 7011661
Alignment:
| Q |
26 |
ttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcgacaactatatgaacttgtgtctca |
125 |
Q |
| |
|
|||||| ||||| |||| ||||| || ||||| ||| || |||||||||||||||| ||||| ||||| ||||| ||||| | | ||||||| ||| | |
|
|
| T |
7011859 |
ttcatcctcataccgattgaaatcgacgtccatatcaacattccttctaataaagttatgtatagccatcgttgcaacaacgacttcaacttgtatctta |
7011760 |
T |
|
| Q |
126 |
tatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
| |||| |||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
7011759 |
attgtgaatttaggcatgcgtcgtagaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagtgataataattg |
7011661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 38469417 - 38469319
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgc |
100 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| ||||||||| | ||| |||| || |||||| |||||||||||||| |||| |||||| |
|
|
| T |
38469417 |
atcatcatgatgaatgactgtgctttcatcttcataaacattaaaatccatatcattttctgccttccttcggataaagttgtgtatagccactgttgc |
38469319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 44240356 - 44240135
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||| |||| || |||||| ||||||||| |||| |||||||||||| |
|
|
| T |
44240356 |
atcatcatggtgaatgattgtgctttcatcttcataaacattaaaatcaatatcaatttatgccttccttcagataaagttgcgtatagccattgttgcg |
44240257 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||| ||||||||||||||| |||| || |||||||||| ||| || ||||||||| | |||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
44240256 |
acaactatttgaacttgtgtctcaaatttaaagttaggcatgcgacgtaggattgcaaatatgttcttccataccccaaaagttctttctattgtgtatc |
44240157 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
44240156 |
ttaaacttgagtgataataatt |
44240135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 193621 - 193400
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| ||||||||| | ||| |||| || |||||| |||||||||||||| |||||||||||| |
|
|
| T |
193621 |
atcatcatgatgaatgactgtgctttcatcttcataaacattaaaatccatatcattttctgccttccttcggataaagttgtgtatagccattgttgcg |
193522 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||| |||||||| |||||| |||| ||||||||||| | ||| || ||||||||||| |||||||||||||||||||||||||| |||||||| | |
|
|
| T |
193521 |
acaactatttgaacttgagtctcaaatttaaacttaggcattcgacgtaggattgcaaatctgttcttccataccccaaaagttctttctattgtgcacc |
193422 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
||||||| |||||||| ||||| |
|
|
| T |
193421 |
ttaaactagagtgataataatt |
193400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 721225 - 721004
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| ||||||||| | ||| |||| || |||||| |||||||||||||| |||||||||||| |
|
|
| T |
721225 |
atcatcatgatgaatgactgtgctttcatcttcataaacattaaaatccatatcattttctgccttccttcggataaagttgtgtatagccattgttgcg |
721126 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||| |||||||| |||||| |||| ||||||||||| | ||| || ||||||||||| |||||||||||||||||||||||||| |||||||| | |
|
|
| T |
721125 |
acaactatttgaacttgagtctcaaatttaaacttaggcattcgacgtaggattgcaaatctgttcttccataccccaaaagttctttctattgtgcacc |
721026 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
||||||| |||||||| ||||| |
|
|
| T |
721025 |
ttaaactagagtgataataatt |
721004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 882332 - 882111
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| ||||||||| | ||| |||| || |||||| |||||||||||||| |||||||||||| |
|
|
| T |
882332 |
atcatcatgatgaatgactgtgctttcatcttcataaacattaaaatccatatcattttctgccttccttcggataaagttgtgtatagccattgttgcg |
882233 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||| |||||||| |||||| |||| ||||||||||| | ||| || ||||||||||| |||||||||||||||||||||||||| |||||||| | |
|
|
| T |
882232 |
acaactatttgaacttgagtctcaaatttaaacttaggcattcgacgtaggattgcaaatctgttcttccataccccaaaagttctttctattgtgcacc |
882133 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
||||||| |||||||| ||||| |
|
|
| T |
882132 |
ttaaactagagtgataataatt |
882111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 30983072 - 30983293
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| ||||||||| | ||| |||| || |||||| |||||||||||||| |||||||||||| |
|
|
| T |
30983072 |
atcatcatgatgaatgactgtgctttcatcttcataaacattaaaatccatatcattttctgccttccttcggataaagttgtgtatagccattgttgcg |
30983171 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatc |
201 |
Q |
| |
|
|||||||| |||||||| |||||| |||| ||||||||||| | ||| || ||||||||||| |||||||||||||||||||||||||| |||||||| | |
|
|
| T |
30983172 |
acaactatttgaacttgagtctcaaatttaaacttaggcattcgacgtaggattgcaaatctgttcttccataccccaaaagttctttctattgtgcacc |
30983271 |
T |
|
| Q |
202 |
ttaaacttgagtgatagtaatt |
223 |
Q |
| |
|
||||||| |||||||| ||||| |
|
|
| T |
30983272 |
ttaaactagagtgataataatt |
30983293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 19648400 - 19648202
Alignment:
| Q |
26 |
ttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcgacaactatatgaacttgtgtctca |
125 |
Q |
| |
|
|||||| ||||| |||| ||||| || ||||| |||||| |||||||||||||||| ||||| ||||||||||| ||||| | | ||||||||||| | |
|
|
| T |
19648400 |
ttcatcctcataccgattgaaatcgacgtccatatcagcattccttctaataaagttatgtatagccattgttgcaacaacgacttcaacttgtgtctta |
19648301 |
T |
|
| Q |
126 |
tatttgaacttaggcatgctacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
| |||| |||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
19648300 |
attgtgaatttaggcatgcgtcgtagaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagtgataataattg |
19648202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 30210818 - 30210678
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| ||||||||| | ||| |||| || |||||| |||||||||||||| |||||||||||| |
|
|
| T |
30210818 |
atcatcatgatgaatgactgtgctttcatcttcataaacattaaaatccatatcattttctgccttccttcggataaagttgtgtatagccattgttgcg |
30210719 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcat |
142 |
Q |
| |
|
|||||||| |||||||| |||||| |||| ||||||||||| |
|
|
| T |
30210718 |
acaactatttgaacttgagtctcaaatttaaacttaggcat |
30210678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 9553366 - 9553588
Alignment:
| Q |
2 |
atcatcatggtgaatgactgtattttcatcttcataaagattaaaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcg |
101 |
Q |
| |
|
|||||| |||||||||| |||| ||||||||||||||||||| | |||| |||||||||| || ||||||| ||||| || | ||||| |||||||| | |
|
|
| T |
9553366 |
atcatcgtggtgaatgagtgtaatttcatcttcataaagattgacgtcaatatccatttcaacattccttctgataaa-ttatatattgtcattgttgtg |
9553464 |
T |
|
| Q |
102 |
acaactatatgaacttgtgtctcatatttgaacttaggcatgctacgcagaattgcaaatctattcttccatacccc-aaaagttctttcaattgtgcat |
200 |
Q |
| |
|
| ||| | ||||||||||| |||||||| || ||||| || ||| | || |||||| | ||||| |||||||| |||| |||||| ||||| ||| |
|
|
| T |
9553465 |
aaaacaacttgaacttgtgtttcatatttaaaattaggtatctaacgaatgatagcaaatgtgttctttcatacccctaaaatttcttttaattgcgcac |
9553564 |
T |
|
| Q |
201 |
cttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
|||||||||||||| || |||||| |
|
|
| T |
9553565 |
cttaaacttgagtggtaataattg |
9553588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 199979 - 200154
Alignment:
| Q |
45 |
aaatcaacatccatttcagcactccttctaataaagttgtgtattgccattgttgcgacaactatatgaacttgtgtctcatatttgaacttaggcatgc |
144 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||||||||||| |||||||||| | ||| | ||||| |||||| | | |||| |||||||||| |
|
|
| T |
199979 |
aaatcaacatccatatcagcattctttctaataaagttgtgt----ccattgttgcaataaccacttgaacctgtgtcataattgtgaatttaggcatgc |
200074 |
T |
|
| Q |
145 |
tacgcagaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattg |
224 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||| |||||| |
|
|
| T |
200075 |
gtcgtagaattgcaaatctattcttccatacaccaaaagttctttctattgggcaccttaaacttgagtgataataattg |
200154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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