View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17314_high_2 (Length: 457)
Name: NF17314_high_2
Description: NF17314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17314_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Original strand, 30808927 - 30809356
Alignment:
| Q |
17 |
aaagaaactcttcaaaaataaaataactaaagcatgttctaaatgcttacacaaaccttcaagaatagtattgcaagtatttcatcttcaattgcaacat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30808927 |
aaagaaactcttcaaaaataaaataactaaagcatgttctaaatgcttacacaaaccttcaagaatagtattgcaagtatttcatcttcaattgcaacat |
30809026 |
T |
|
| Q |
117 |
tcttcatgtatatgatggtaaattcatctcaaattcaaggtcccaacaaaggcaaggaaaaattgattgagtttctttgtagttgttgcttgctatgtgt |
216 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30809027 |
tcttcatatatatgatggtaaattcatcccaaattcaagatcctaacaaaggcagggaaaaattgattgagtttctttgtagttgttgcttgctatgtgt |
30809126 |
T |
|
| Q |
217 |
gtgttgtccagtatgttgtttcatcaaaccatcttgtatactatgtcatcgaacactgcggcgcgcgtggcggtggtcttgttatggacgaaaaaataag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30809127 |
gtgttgtccagtatgttgtttcatcaaaccatcttgtatactatgtcatcgaacgctgcggcgcgcatggcggtggtcttgttatggacgaaaaaataag |
30809226 |
T |
|
| Q |
317 |
gtgtttgctgattattcttcattttctgatagtgattcagatatcacttaagctaaggttacaactaatttacttatttttgtttctgaagacaaaattg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30809227 |
gtgtttgctgattattcttcattttctgatagtgattcagatatcacttaagctaaggttacaactaatttacttatttttatttctgaagacaaaattg |
30809326 |
T |
|
| Q |
417 |
atagagttttttcattacttgttaagtataat |
448 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
|
|
| T |
30809327 |
at--agttttttcattacttgttaagtataat |
30809356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University