View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17314_high_4 (Length: 415)
Name: NF17314_high_4
Description: NF17314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17314_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 143 - 408
Target Start/End: Original strand, 41192695 - 41192960
Alignment:
| Q |
143 |
gtatgtagagtaaggataacgtgagtatgatatgtttttgatgtgatcaattaataatgatagagtatagtcgattgtacggactagctaagccgtcaaa |
242 |
Q |
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| T |
41192695 |
gtatgtagagtaaggataacgtgagtatgatatgtctttgatgtgatcaataaataatgatagagtatagttgattgtacggactagctaagccatcaaa |
41192794 |
T |
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| Q |
243 |
atcattcaacaataaaaacaaggttggcccttcaataaggtagacatgtgccacttacaacacattatttggttaaattcatatcacacagcagggaggg |
342 |
Q |
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| T |
41192795 |
atcattcaacaataaaaacaaggttggcccttcaataaggtagacatgtgccacttacaacacattatttggttaaattcatatcacacagcagggaggg |
41192894 |
T |
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| Q |
343 |
ataataaagaaactagggatttgattacttgatgtggtaggagatttttgattgtggcctatgcta |
408 |
Q |
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| T |
41192895 |
ataataaagaaactagggatttgattacttgatgtggtaggagatttttgattgtggcctatgcta |
41192960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 41192568 - 41192631
Alignment:
| Q |
16 |
tcatataatgctttggtgtaaattaataaacctctttacatactgctaaattattcacttaaac |
79 |
Q |
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| T |
41192568 |
tcatataatgctttggtgtaaattaataaacctctttacatactgcttaattattcacttaaac |
41192631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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