View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17314_low_10 (Length: 286)

Name: NF17314_low_10
Description: NF17314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17314_low_10
NF17314_low_10
[»] chr6 (6 HSPs)
chr6 (141-279)||(31984002-31984143)
chr6 (1-107)||(31983894-31983999)
chr6 (153-274)||(31986656-31986777)
chr6 (1-107)||(31986528-31986634)
chr6 (1-104)||(22470771-22470874)
chr6 (2-104)||(22427082-22427184)
[»] chr4 (3 HSPs)
chr4 (158-199)||(12572944-12572985)
chr4 (142-191)||(20871372-20871421)
chr4 (142-198)||(22304370-22304426)
[»] chr2 (1 HSPs)
chr2 (156-198)||(30956958-30957000)
[»] chr1 (1 HSPs)
chr1 (17-98)||(9883578-9883659)
[»] chr5 (1 HSPs)
chr5 (17-85)||(26332585-26332653)


Alignment Details
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 141 - 279
Target Start/End: Original strand, 31984002 - 31984143
Alignment:
Q  141 gtttattagtacaaatttcatgctttgttaacttcagttaaatagttt---ttagcatttaaaatctgcaagaagcaattgaaaaattggtgattattgt 237  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||   ||| || | ||||| || ||||||||||| ||||| |||||||||||||    
T  31984002 gtttattagtacaaatttcatactttgttaacttcaattaaatagtttaatttaacactaaaaatttgtaagaagcaatttaaaaaatggtgattattgt 31984101  T
Q  238 atacgtcattgatcaatatgtcacatgtatcccttcatctca 279  Q
    || |||| || |||||||||||||||||||||||||| ||||    
T  31984102 atccgtctttaatcaatatgtcacatgtatcccttcagctca 31984143  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 31983894 - 31983999
Alignment:
Q  1 ttatttccgcctttttaacaagaaactgagaaagaaggatgatcaaagcataaccaaacatgtgatattgagccatttttttcctcttttgcttgtaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| |||||||||||| |||||||||| ||||| |||| ||    
T  31983894 ttatttccgcctttttaacaagaaactgagaaagaaggatgatcaaaacaaaaacaaacatgagatattgagcca-ttttttcctcctttgcatgtatta 31983992  T
Q  101 aagagat 107  Q
     ||||||    
T  31983993 gagagat 31983999  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 153 - 274
Target Start/End: Original strand, 31986656 - 31986777
Alignment:
Q  153 aaatttcatgctttgttaacttcagttaaatagtttttagcatttaaaatctgcaagaagcaattgaaaaattggtgattattgtatacgtcattgatca 252  Q
    ||||||||| |  ||||||||||| |||||||||||||| ||  || ||| |||||||||||||| ||||| | ||||||||||| ||||||||||||||    
T  31986656 aaatttcataccatgttaacttcaattaaatagtttttaacacctagaatttgcaagaagcaatttaaaaaatagtgattattgtttacgtcattgatca 31986755  T
Q  253 atatgtcacatgtatcccttca 274  Q
    |||||| |||||||||||||||    
T  31986756 atatgtaacatgtatcccttca 31986777  T

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Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 31986528 - 31986634
Alignment:
Q  1 ttatttccgcctttttaacaagaaactgagaaagaaggatgatcaaagcataaccaaacatgtgatattgagccatttttttcctcttttgcttgtaata 100  Q
    ||||||||||||||| |||||||||   ||||||||||||||||||| ||||| |||||||| |||||||| |||| ||||||||| ||||| |||||||    
T  31986528 ttatttccgccttttcaacaagaaatatagaaagaaggatgatcaaaacataaacaaacatgagatattgaaccatatttttcctcctttgcatgtaata 31986627  T
Q  101 aagagat 107  Q
    |||||||    
T  31986628 aagagat 31986634  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 22470874 - 22470771
Alignment:
Q  1 ttatttccgcctttttaacaagaaactgagaaagaaggatgatcaaagcataaccaaacatgtgatattgagccatttttttcctcttttgcttgtaata 100  Q
    ||||||| ||||||| ||||| ||| ||||| |||||||||||||||||||||  ||||| | | ||||||||||| ||||||||   |||| |||||||    
T  22470874 ttatttctgccttttcaacaataaattgagagagaaggatgatcaaagcataaagaaacacgaggtattgagccatatttttcctacattgcatgtaata 22470775  T
Q  101 aaga 104  Q
    ||||    
T  22470774 aaga 22470771  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 22427184 - 22427082
Alignment:
Q  2 tatttccgcctttttaacaagaaactgagaaagaaggatgatcaaagcataaccaaacatgtgatattgagccatttttttcctcttttgcttgtaataa 101  Q
    ||||| |||||||| ||||| |||  |||| |||| |||||| |||||||||  ||||||| |||||||| |||| |||||||||  |||| ||||||||    
T  22427184 tatttgcgccttttgaacaacaaatagagatagaaagatgatgaaagcataaagaaacatgagatattgaaccatatttttcctcaattgcatgtaataa 22427085  T
Q  102 aga 104  Q
    |||    
T  22427084 aga 22427082  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 12572985 - 12572944
Alignment:
Q  158 tcatgctttgttaacttcagttaaatagtttttagcatttaa 199  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  12572985 tcatgctttgttaactttagttaaatagtttttagcatttaa 12572944  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 20871421 - 20871372
Alignment:
Q  142 tttattagtacaaatttcatgctttgttaacttcagttaaatagttttta 191  Q
    ||||| |||| |||||||||||||||||||||||||| ||||||||||||    
T  20871421 tttataagtaaaaatttcatgctttgttaacttcagtgaaatagttttta 20871372  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 22304426 - 22304370
Alignment:
Q  142 tttattagtacaaatttcatgctttgttaacttcagttaaatagtttttagcattta 198  Q
    ||||| |||| ||||||||| ||||||||| ||||  ||||||||||||| ||||||    
T  22304426 tttataagtaaaaatttcatactttgttaatttcaactaaatagtttttaacattta 22304370  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 30957000 - 30956958
Alignment:
Q  156 tttcatgctttgttaacttcagttaaatagtttttagcattta 198  Q
    ||||||||||||| || ||||| ||||||||||||||||||||    
T  30957000 tttcatgctttgtcaagttcagctaaatagtttttagcattta 30956958  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 9883578 - 9883659
Alignment:
Q  17 aacaagaaactgagaaagaaggatgatcaaagcataaccaaacatgtgatattgagccatttttttcctcttttgcttgtaa 98  Q
    ||||||||| ||||| |||| |||||| ||||||||| ||||||   ||  ||||| ||| ||||||||| |||||||||||    
T  9883578 aacaagaaattgagatagaaagatgattaaagcataaacaaacacacgaatttgagacatatttttcctcctttgcttgtaa 9883659  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 26332653 - 26332585
Alignment:
Q  17 aacaagaaactgagaaagaaggatgatcaaagcataaccaaacatgtgatattgagccatttttttcct 85  Q
    |||||||||  ||||||||| | |||||||||||||| ||||||||  | ||| |||||| ||||||||    
T  26332653 aacaagaaatagagaaagaaagttgatcaaagcataaacaaacatggaaaatttagccatatttttcct 26332585  T

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