View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17314_low_12 (Length: 277)
Name: NF17314_low_12
Description: NF17314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17314_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 2920649 - 2920896
Alignment:
| Q |
19 |
ttgaattcctcaagtattattacactgaaaaaggccaaagagaccaatttgctatgcgcacttattgtggcgtttgagctagcttatggaataatattat |
118 |
Q |
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| T |
2920649 |
ttgaattcctcaagtattattacactgaaaaaggccaaagggaccaatttgctatgcgcacttattgtggcgtttgagctagcttatggaataatattat |
2920748 |
T |
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| Q |
119 |
taagcgggtggaacataaatatatatgttgtgtgttcaagtgttcttcaaaaaatttatcttgagctatatgttgtttgcattgattggctttgtatgaa |
218 |
Q |
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| T |
2920749 |
taagagggtggaccataaatatatatgttgtgtgttcaagtgttctccaaacattttaacttgagctatatgttgtttgcattcattagctttgtatgaa |
2920848 |
T |
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| Q |
219 |
atattgtgttgtgtgatcaaatataaaactactatgctttgtgttcat |
266 |
Q |
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| T |
2920849 |
gtattgtattgtgtgatcaaatataaaattactatgctttgtgttcat |
2920896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 2935766 - 2935842
Alignment:
| Q |
185 |
tatatgttgtttgcattgattggctttgtatgaaatattg-tgttgtgtgatcaaatataaaactactatgctttgtgttc |
264 |
Q |
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| T |
2935766 |
tatatgttgtttgtattga----ctttgtaagaagtattggtgttgtgtgatcaaatataaaactactatgctttgtgttc |
2935842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 2935698 - 2935730
Alignment:
| Q |
132 |
cataaatatatatgttgtgtgttcaagtgttct |
164 |
Q |
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| T |
2935698 |
cataaatatatatggtgtgtgttcaagtgttct |
2935730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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