View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17314_low_5 (Length: 437)

Name: NF17314_low_5
Description: NF17314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17314_low_5
NF17314_low_5
[»] chr4 (19 HSPs)
chr4 (209-429)||(1552924-1553144)
chr4 (20-212)||(1553504-1553696)
chr4 (223-301)||(1548729-1548807)
chr4 (315-424)||(1548583-1548692)
chr4 (320-409)||(12121631-12121720)
chr4 (315-409)||(1537941-1538035)
chr4 (315-409)||(55505279-55505373)
chr4 (308-409)||(1545597-1545698)
chr4 (320-409)||(1489535-1489624)
chr4 (320-409)||(1513578-1513667)
chr4 (317-405)||(640748-640836)
chr4 (308-348)||(6006151-6006191)
chr4 (306-408)||(546735-546837)
chr4 (315-409)||(1508177-1508271)
chr4 (308-348)||(3438798-3438838)
chr4 (309-365)||(7226101-7226157)
chr4 (308-346)||(7307684-7307722)
chr4 (308-348)||(370751-370791)
chr4 (57-93)||(1549305-1549341)
[»] chr3 (2 HSPs)
chr3 (308-403)||(514908-515003)
chr3 (308-408)||(51113956-51114056)
[»] chr8 (2 HSPs)
chr8 (308-348)||(32151125-32151165)
chr8 (248-305)||(18315515-18315572)
[»] chr2 (2 HSPs)
chr2 (231-302)||(45245389-45245460)
chr2 (315-403)||(44575675-44575763)
[»] chr1 (2 HSPs)
chr1 (316-348)||(43634029-43634061)
chr1 (61-109)||(33691169-33691217)
[»] chr5 (1 HSPs)
chr5 (259-305)||(12845345-12845391)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 209 - 429
Target Start/End: Complemental strand, 1553144 - 1552924
Alignment:
Q  209 ctggaaaaataacttacattgtaaagttcaaacttcagaagagtagttttggaatactagcaaacaagacatccttgatgcgagaagagttccctttgat 308  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1553144 ctggaaaaataacttacattataaagttcaaacttcagaagagtagttttggaatactagcaaacaagacatccttgatgcgagaagagttccctttgat 1553045  T
Q  309 ggagcagttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1553044 ggagcagttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagtt 1552945  T
Q  409 gcaagcaattttcttcgacat 429  Q
    |||||||||||||| ||||||    
T  1552944 gcaagcaattttctccgacat 1552924  T

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Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 1553696 - 1553504
Alignment:
Q  20 aatagcaacagcagccatcaaaacggcacagtagcaggattgtgccgcttttcaaccgctaatagaggccactattgccgctactctcaacagggacggg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1553696 aatagcaacagcagccatcaaaacggcacagtagcaggattgtgccgcttttcaaccgctaatagaggccactattgccgctactctcaacagggacggg 1553597  T
Q  120 cctatagcatagtagtggagggccatatcaccatgctacaccgctatagtgcaatattgacaataaagatgtaaataaaccccttgctgctgg 212  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1553596 cctatagcatagtagtggagggccgtatcaccatgctacaccgctatagtgcaatattgacaataaagatgtaaataaaccccttgctgctgg 1553504  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 223 - 301
Target Start/End: Complemental strand, 1548807 - 1548729
Alignment:
Q  223 tacattgtaaagttcaaacttcagaagagtagttttggaatactagcaaacaagacatccttgatgcgagaagagttcc 301  Q
    |||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1548807 tacattttagaggtcaaacttcagaagagtagttttcgaatactagcaaacaagacatccttgatgcgagaagagttcc 1548729  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 315 - 424
Target Start/End: Complemental strand, 1548692 - 1548583
Alignment:
Q  315 gttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttgcaagc 414  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||| || || || || |||||||| |||||| || ||||| |||||| |||    
T  1548692 gttatctttctcaatgatggtcttgaaaataccaatgaagcgacaacatcatcatgcaattgaaaacaaccttccaaattaatttctctcagttgcgagc 1548593  T
Q  415 aattttcttc 424  Q
    | ||||||||    
T  1548592 agttttcttc 1548583  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 320 - 409
Target Start/End: Complemental strand, 12121720 - 12121631
Alignment:
Q  320 ctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttg 409  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||  || ||||| |||||||  |||||||| |||||||||||||||    
T  12121720 ctttctcaatgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttg 12121631  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 409
Target Start/End: Complemental strand, 1538035 - 1537941
Alignment:
Q  315 gttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttg 409  Q
    |||| |||||| || |||||||||||||||| |||||| | || |||||||| |||||||| || ||| | ||||||||||||||||||||||||    
T  1538035 gttaactttcttaacgatggccttgaaaatatcaatgaggtaagaacatcatcatccacttgaacacaccttttcaaattgatctctcttagttg 1537941  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 409
Target Start/End: Complemental strand, 55505373 - 55505279
Alignment:
Q  315 gttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttg 409  Q
    |||||||||||||||||||||||||||||||||| |||  ||||||||  |  || |||||||  |||||| ||||| |||||||||||||||||    
T  55505373 gttatctttctcaatgatggccttgaaaataccattgagtcaacaacactagtatgcactttatcacaaccgttcaagttgatctctcttagttg 55505279  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 409
Target Start/End: Original strand, 1545597 - 1545698
Alignment:
Q  308 tggagcagttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagt 407  Q
    ||||||||||||  ||||||||||||||||||| ||||| ||| |||||| ||||| |  || |||||||  ||||||  ||||||||||| ||||||||    
T  1545597 tggagcagttatacttctcaatgatggccttgataatactaataaagcaataacattagcatgcactttatcacaacccctcaaattgatcactcttagt 1545696  T
Q  408 tg 409  Q
    ||    
T  1545697 tg 1545698  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 409
Target Start/End: Complemental strand, 1489624 - 1489535
Alignment:
Q  320 ctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttg 409  Q
    |||||| || |||||||||||||||| |||||| |||| |||||||| || ||||| |  |||   ||||||||||||||||||||||||    
T  1489624 ctttcttaacgatggccttgaaaatatcaatgaggcaagaacatcatcatgcacttgaccacacattttcaaattgatctctcttagttg 1489535  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 409
Target Start/End: Complemental strand, 1513667 - 1513578
Alignment:
Q  320 ctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttg 409  Q
    |||||| || |||||||||||||||| |||||| |||| |||||||  || |||||||  ||||  |||||||||||||||||| |||||    
T  1513667 ctttcttaacgatggccttgaaaatatcaatgaggcaagaacatcaccattcactttagaacaatatttcaaattgatctctctcagttg 1513578  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 405
Target Start/End: Original strand, 640748 - 640836
Alignment:
Q  317 tatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctctta 405  Q
    |||||||||||||||||||||||||||||||| |||  |||| |||| |  || |||||||  |||||| || ||||||| ||||||||    
T  640748 tatctttctcaatgatggccttgaaaataccattgagtcaacgacattagcattcactttattacaaccctttaaattgacctctctta 640836  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 6006151 - 6006191
Alignment:
Q  308 tggagcagttatctttctcaatgatggccttgaaaatacca 348  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  6006151 tggagcagttatctttctcaatgatggccttgtaaatacca 6006191  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 546735 - 546837
Alignment:
Q  306 gatggagcagttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctctta 405  Q
    ||||||||  ||||||||||||||||||||||| |||||| || |||||||||  ||| |  || |||||||  |||| |  | ||||||||||||||||    
T  546735 gatggagctattatctttctcaatgatggccttaaaaataacattgaagcaacggcattaacattcactttattacaagcccttaaattgatctctctta 546834  T
Q  406 gtt 408  Q
    |||    
T  546835 gtt 546837  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 409
Target Start/End: Complemental strand, 1508271 - 1508177
Alignment:
Q  315 gttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttg 409  Q
    ||||| |||||||| |||||||||||||||| |||||| |||| |||||||  |   || ||| ||| |  ||||||||||||||||||||||||    
T  1508271 gttatttttctcaacgatggccttgaaaatatcaatgaggcaagaacatcaccacgtaccttaggaccatatttcaaattgatctctcttagttg 1508177  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 3438838 - 3438798
Alignment:
Q  308 tggagcagttatctttctcaatgatggccttgaaaatacca 348  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  3438838 tggagcagttacctttctcaatgatggctttgaaaatacca 3438798  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 7226157 - 7226101
Alignment:
Q  309 ggagcagttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatca 365  Q
    |||||| |||||||||||||||||||||||||| | |||| ||| ||||||| ||||    
T  7226157 ggagcaattatctttctcaatgatggccttgaagaaaccattgaggcaacaatatca 7226101  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 7307684 - 7307722
Alignment:
Q  308 tggagcagttatctttctcaatgatggccttgaaaatac 346  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  7307684 tggagcaattatctttctcaatgatggccttgaagatac 7307722  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 370751 - 370791
Alignment:
Q  308 tggagcagttatctttctcaatgatggccttgaaaatacca 348  Q
    |||||||  ||||||||| ||||||||||||||||||||||    
T  370751 tggagcaactatctttctgaatgatggccttgaaaatacca 370791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 1549341 - 1549305
Alignment:
Q  57 gattgtgccgcttttcaaccgctaatagaggccacta 93  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  1549341 gattgcgccgcttttcaaccgctaatagcggccacta 1549305  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 308 - 403
Target Start/End: Complemental strand, 515003 - 514908
Alignment:
Q  308 tggagcagttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctct 403  Q
    |||||||  |||||||||||||||||||||||||||||||| ||  |||||||||| || || |||||||  ||||||| | ||||||||||||||    
T  515003 tggagcaactatctttctcaatgatggccttgaaaataccattggggcaacaacattataatgcactttattacaacctcttaaattgatctctct 514908  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 408
Target Start/End: Complemental strand, 51114056 - 51113956
Alignment:
Q  308 tggagcagttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagt 407  Q
    |||||| ||||| | ||||||||||||||||||||||| || ||| ||||||| || |  || |||||||| |||||| || ||||| ||||||||||||    
T  51114056 tggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcttagt 51113957  T
Q  408 t 408  Q
    |    
T  51113956 t 51113956  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 32151125 - 32151165
Alignment:
Q  308 tggagcagttatctttctcaatgatggccttgaaaatacca 348  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32151125 tggagcagttatctttctcaatgatggccttgaaaatacca 32151165  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 18315572 - 18315515
Alignment:
Q  248 agagtagttttggaatactagcaaacaagacatccttgatgcgagaagagttcccttt 305  Q
    ||||||||||  |||| |||||||||||| |||| |||| ||||||||||||||||||    
T  18315572 agagtagtttgagaatgctagcaaacaaggcatctttgacgcgagaagagttcccttt 18315515  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 45245460 - 45245389
Alignment:
Q  231 aaagttcaaacttcagaagagtagttttggaatactagcaaacaagacatccttgatgcgagaagagttccc 302  Q
    ||||||||||||| || |||| |||||  |||| |||||||||||| ||||||||| |||| ||||||||||    
T  45245460 aaagttcaaacttaagtagagcagtttcagaatgctagcaaacaaggcatccttgacgcgacaagagttccc 45245389  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 403
Target Start/End: Complemental strand, 44575763 - 44575675
Alignment:
Q  315 gttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctct 403  Q
    |||| ||||||||||||||||||||||| || ||| || |||| ||||||| ||| ||| |||  ||||  | ||||||||| ||||||    
T  44575763 gttaactttctcaatgatggccttgaaagtatcaacgaggcaagaacatcacgatgcacattatcacaatttctcaaattgagctctct 44575675  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 348
Target Start/End: Original strand, 43634029 - 43634061
Alignment:
Q  316 ttatctttctcaatgatggccttgaaaatacca 348  Q
    |||||||||||||||||||||||||||||||||    
T  43634029 ttatctttctcaatgatggccttgaaaatacca 43634061  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 33691169 - 33691217
Alignment:
Q  61 gtgccgcttttcaaccgctaatagaggccactattgccgctactctcaa 109  Q
    ||||||||||||||| |||||||| |||| || ||| ||||||||||||    
T  33691169 gtgccgcttttcaacagctaatagcggccgctgttgacgctactctcaa 33691217  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 12845345 - 12845391
Alignment:
Q  259 ggaatactagcaaacaagacatccttgatgcgagaagagttcccttt 305  Q
    |||||||||| ||||||| ||||| |||||| |||||||||||||||    
T  12845345 ggaatactagaaaacaaggcatccatgatgcaagaagagttcccttt 12845391  T

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