View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17314_low_8 (Length: 328)

Name: NF17314_low_8
Description: NF17314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17314_low_8
NF17314_low_8
[»] chr2 (14 HSPs)
chr2 (1-312)||(32310376-32310687)
chr2 (1-313)||(32813795-32814107)
chr2 (1-312)||(32564133-32564444)
chr2 (1-312)||(32786585-32786899)
chr2 (1-313)||(28221824-28222136)
chr2 (1-312)||(28214149-28214460)
chr2 (1-312)||(32306243-32306557)
chr2 (34-206)||(32317376-32317548)
chr2 (268-312)||(32792968-32793012)
chr2 (149-200)||(28183155-28183206)
chr2 (2-72)||(28171417-28171487)
chr2 (1-73)||(28174622-28174695)
chr2 (149-257)||(28177370-28177478)
chr2 (4-73)||(28183014-28183085)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 32310376 - 32310687
Alignment:
Q  1 actttcaaggaacagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggccaaactgtcctggaaacagtaagaacaatatcagctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||| ||||| |    
T  32310376 actttcaaggaacagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaacaatttcagcag 32310475  T
Q  101 caacggcacgttttcgacgtttacagcttcaaagccaacgaatgttcatcactctaataacaaagggatgtcatacatgcaagcattgtcatctgcagtg 200  Q
    |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32310476 caacggcacgttttcgtcgtttacagcttcaaagccaatgaacgttcatcactctaatgacaaagggatgtcatacatgcaagcattgtcatctgcagtg 32310575  T
Q  201 ccatctggagcatctttcgacactcactgctatcatagtttgttgagaggaagagggttattgtttgctgatcaactgctgatggctcaagagaagactg 300  Q
    ||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32310576 ccatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactg 32310675  T
Q  301 ccagattggttt 312  Q
    ||||||||||||    
T  32310676 ccagattggttt 32310687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 32814107 - 32813795
Alignment:
Q  1 actttcaaggaacagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggccaaactgtcctggaaacagtaagaacaatatcagctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||| ||||| |    
T  32814107 actttcaaggaacagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaacaatttcagcag 32814008  T
Q  101 caacggcacgttttcgacgtttacagcttcaaagccaacgaatgttcatcactctaataacaaagggatgtcatacatgcaagcattgtcatctgcagtg 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||     
T  32814007 caacggcacgttttcgacgtttacagcttcaaagccaatgaatgttcaactctctaatgacaaagggatgtcatacatgcaagcattgtcatctgcagta 32813908  T
Q  201 ccatctggagcatctttcgacactcactgctatcatagtttgttgagaggaagagggttattgtttgctgatcaactgctgatggctcaagagaagactg 300  Q
    ||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32813907 ccatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactg 32813808  T
Q  301 ccagattggtttt 313  Q
    |||||||||||||    
T  32813807 ccagattggtttt 32813795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 32564444 - 32564133
Alignment:
Q  1 actttcaaggaacagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggccaaactgtcctggaaacagtaagaacaatatcagctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||| ||||| |    
T  32564444 actttcaaggaacagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaacaatttcagcag 32564345  T
Q  101 caacggcacgttttcgacgtttacagcttcaaagccaacgaatgttcatcactctaataacaaagggatgtcatacatgcaagcattgtcatctgcagtg 200  Q
    |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  32564344 caacggcacgttttcgtcgtttacagcttcaaagccaatgaacgttcatcactctaatgacaaagggatgtcatacatgcaagcattgtcatctgcagtt 32564245  T
Q  201 ccatctggagcatctttcgacactcactgctatcatagtttgttgagaggaagagggttattgtttgctgatcaactgctgatggctcaagagaagactg 300  Q
    ||||||||||||| ||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32564244 ccatctggagcattttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactg 32564145  T
Q  301 ccagattggttt 312  Q
    ||||||||||||    
T  32564144 ccagattggttt 32564133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 32786899 - 32786585
Alignment:
Q  1 actttcaaggaacagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggccaaactgtcctggaaacagtaagaacaatatcagctg 100  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||||||| |    
T  32786899 actttcaaggaacagggcaaccagacccaagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaataatatcagcag 32786800  T
Q  101 caacggcacgttttcgacgtttacagcttcaaagccaacgaatgttcatcactctaata---acaaagggatgtcatacatgcaagcattgtcatctgca 197  Q
    |||||||||||||||||||||||||  |||||||  || ||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||    
T  32786799 caacggcacgttttcgacgtttacaatttcaaagaaaatgaatgttcatcactctagtagtgacaaagggatgtcatacatgcaagcattgtcatctgca 32786700  T
Q  198 gtgccatctggagcatctttcgacactcactgctatcatagtttgttgagaggaagagggttattgtttgctgatcaactgctgatggctcaagagaaga 297  Q
    |||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32786699 gtgccatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaaga 32786600  T
Q  298 ctgccagattggttt 312  Q
    |||||||||||||||    
T  32786599 ctgccagattggttt 32786585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 28221824 - 28222136
Alignment:
Q  1 actttcaaggaacagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggccaaactgtcctggaaacagtaagaacaatatcagctg 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||  |||| |||||| ||| ||| | |    
T  28221824 actttcaaggaacagggcaaccagacccgagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaataatgtcatcag 28221923  T
Q  101 caacggcacgttttcgacgtttacagcttcaaagccaacgaatgttcatcactctaataacaaagggatgtcatacatgcaagcattgtcatctgcagtg 200  Q
    |||||| | ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28221924 caacggaatgttttcgacgtttacagtttcaaagccaatgaatgttcatcactctaataacaaagggatgtcatacaagcaagcattgtcatctgcagtg 28222023  T
Q  201 ccatctggagcatctttcgacactcactgctatcatagtttgttgagaggaagagggttattgtttgctgatcaactgctgatggctcaagagaagactg 300  Q
     |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  28222024 tcatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggcttaagagaagactg 28222123  T
Q  301 ccagattggtttt 313  Q
    ||| |||||||||    
T  28222124 ccatattggtttt 28222136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 28214460 - 28214149
Alignment:
Q  1 actttcaaggaacagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggccaaactgtcctggaaacagtaagaacaatatcagctg 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| |||||||||||  |||| |||||| ||| ||||| |    
T  28214460 actttcaaggaacagggcaaccagacccgagtatacctctcgatttccttagtcagatgaggcaaaactgtcctgacaacaataagaataatgtcagcag 28214361  T
Q  101 caacggcacgttttcgacgtttacagcttcaaagccaacgaatgttcatcactctaataacaaagggatgtcatacatgcaagcattgtcatctgcagtg 200  Q
    |||||| | ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28214360 caacggaatgttttcgacgtttacagtttcaaagccaatgaatgttcatcactctaataacaaagggatgtcatacaagcaagcattgtcatctgcagtg 28214261  T
Q  201 ccatctggagcatctttcgacactcactgctatcatagtttgttgagaggaagagggttattgtttgctgatcaactgctgatggctcaagagaagactg 300  Q
     |||||||||||||||| |||||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |    
T  28214260 tcatctggagcatcttttgacactcactactatcagagattgttgagaggaagagggttattgtttgctgatcaacagctgatggctgaagagaagacag 28214161  T
Q  301 ccagattggttt 312  Q
    ||| ||||||||    
T  28214160 ccaaattggttt 28214149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 32306243 - 32306557
Alignment:
Q  1 actttcaaggaacagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggccaaactgtcctggaaacagtaagaacaatatcagctg 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||| | |||||||||||   |||||||||||||||||| | |    
T  32306243 actttcaaggaacagggcaaccagacccgagtatacctctcgattttttcagtctgatgagactaaactgtcctgactacagtaagaacaatatcaacag 32306342  T
Q  101 caacggcacgttttcgacgtttacagcttcaaagccaacgaatgttcatcactctaata---acaaagggatgtcatacatgcaagcattgtcatctgca 197  Q
    |||||||||||||||||||||||||| ||||||||||   |||| ||||||||||| ||   ||||||||||||||||||||||||||||||||||||||    
T  32306343 caacggcacgttttcgacgtttacagtttcaaagccagtaaatgctcatcactctagtagtgacaaagggatgtcatacatgcaagcattgtcatctgca 32306442  T
Q  198 gtgccatctggagcatctttcgacactcactgctatcatagtttgttgagaggaagagggttattgtttgctgatcaactgctgatggctcaagagaaga 297  Q
    |||||||||||||||| ||| |||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  32306443 gtgccatctggagcatattttgacactcactactatcagagtttgttgagaggaagagggttattgttttctgatcaacagctgatggctcaagagaaga 32306542  T
Q  298 ctgccagattggttt 312  Q
    |||||||||||||||    
T  32306543 ctgccagattggttt 32306557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 32317376 - 32317548
Alignment:
Q  34 tacctctcgattttctcagtcagatgaggccaaactgtcctggaaacagtaagaacaatatcagctgcaacggcacgttttcgacgtttacagcttcaaa 133  Q
    |||||||||||||||| ||||| ||||||| ||| |||||||  |||| | |||| |||||||||  |||| | || ||||||||| ||| || ||||||    
T  32317376 tacctctcgattttctaagtcatatgaggcaaaattgtcctgacaacaattagaataatatcagcaacaacagtacattttcgacggttatagtttcaaa 32317475  T
Q  134 gccaacgaatgttcatcactctaataacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatct 206  Q
    |||||  ||||| |||||||||||||| |||||||| ||||||  |||||| ||||||| |||||||||||||    
T  32317476 gccaattaatgtccatcactctaataataaagggatatcatacgcgcaagctttgtcatatgcagtgccatct 32317548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 32793012 - 32792968
Alignment:
Q  268 ctgatcaactgctgatggctcaagagaagactgccagattggttt 312  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  32793012 ctgatcaacagctgatggctcaagagaagactgccagattggttt 32792968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 28183155 - 28183206
Alignment:
Q  149 tcactctaataacaaagggatgtcatacatgcaagcattgtcatctgcagtg 200  Q
    ||||||||| || |||||||||||||||||| |||| |||||||||||||||    
T  28183155 tcactctaacaaaaaagggatgtcatacatggaagcgttgtcatctgcagtg 28183206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 28171417 - 28171487
Alignment:
Q  2 ctttcaaggaacagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggccaaactgtc 72  Q
    |||||||||||||| ||||||||| | |||||||| ||| ||||| || ||| ||||||||| ||||||||    
T  28171417 ctttcaaggaacagcgcaaccagacctgagtatacttcttgatttgcttagtaagatgaggcaaaactgtc 28171487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 28174622 - 28174695
Alignment:
Q  1 actttcaaggaacagggcaaccagatccga-gtatacctctcgattttctcagtcagatgaggccaaactgtcc 73  Q
    ||||| ||||||||| ||||||||| | |  ||||| |||| |||||||| ||||||||||||| |||||||||    
T  28174622 actttaaaggaacagcgcaaccagacctgtcgtatagctcttgattttcttagtcagatgaggctaaactgtcc 28174695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 28177370 - 28177478
Alignment:
Q  149 tcactctaataacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatctttcgacactcactgctatcatagtttgttgaga 248  Q
    ||||||||| |  |||| |||||||  ||||||||| ||||||||||||||| |||||  |||||| || ||||||   || ||||  ||||| || |||    
T  28177370 tcactctaacataaaagtgatgtcaggcatgcaagcgttgtcatctgcagtgtcatcttaagcatcatttgacacttgatgatatccgagtttattaaga 28177469  T
Q  249 ggaagaggg 257  Q
    |||||||||    
T  28177470 ggaagaggg 28177478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 28183014 - 28183085
Alignment:
Q  4 ttcaaggaacagggcaaccagatccgagtata--cctctcgattttctcagtcagatgaggccaaactgtcc 73  Q
    ||||||||||| ||||||| |||| |||||||  | ||| ||||| || ||||||||||||| |||||||||    
T  28183014 ttcaaggaacaaggcaaccggatctgagtatatacttcttgatttccttagtcagatgaggcaaaactgtcc 28183085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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