View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17315_high_10 (Length: 449)

Name: NF17315_high_10
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17315_high_10
NF17315_high_10
[»] chr5 (6 HSPs)
chr5 (10-305)||(42518152-42518444)
chr5 (14-359)||(42508735-42509087)
chr5 (304-359)||(42518478-42518533)
chr5 (392-433)||(42518666-42518707)
chr5 (355-419)||(42509237-42509305)
chr5 (14-44)||(42524839-42524869)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 305
Target Start/End: Original strand, 42518152 - 42518444
Alignment:
Q  10 attattctctaggttttaaatttaatctcatctacagttaatttgcgatatatcatagaaaattgagagacttatttcaagtttaaaatatttttcacca 109  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  42518152 attattctctgggttttaaatttaatctcatctacagttaatttgcgatctatcattgaaaattgagagccttatttcaagtttaaaatatttttcacca 42518251  T
Q  110 aactatatatgataataaaaagaactttagggaggatttggcttttctttacatccctcttgatgcatcagaaaatgaaccctttagagtttggactatt 209  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  42518252 aactatatatgataataaaaagaactttagggaggatttgtcttttctttacatccctcttgatgcatcagaaaatgaaccctttagagtttggac---t 42518348  T
Q  210 attggttccattttgttgatattatcattccttagattgttaagattttttcataggtacacgattgtttagatttcaattaattaatttgatgag 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42518349 attggttccattttgttgatattatcattccttagattgttaagattttttcataggtacacgattgtttagatttcaattaattaatttgatgag 42518444  T

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Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 14 - 359
Target Start/End: Original strand, 42508735 - 42509087
Alignment:
Q  14 ttctctaggttttaaatttaatctcatctacagttaatttgcg----atatatcatagaaaattgagagacttatttcaagtttaaaatatttttcacca 109  Q
    |||||||||||||||||||||||||||||||  ||||||| |     || ||||||| ||||||||||  ||| ||| ||||| ||||||||||||| ||    
T  42508735 ttctctaggttttaaatttaatctcatctacctttaatttacatacaatctatcatataaaattgaga--cttgttttaagttaaaaatatttttcatca 42508832  T
Q  110 aactatatatgataataaaaagaactttagggaggatttggcttttctttacatccctcttgatgcatcagaaaatgaaccctttagagtttggactatt 209  Q
    | ||||| |||||| ||||||||||||| |||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||||          | |    
T  42508833 a-ctatacatgatagtaaaaagaacttttgggaggatttggcttttcattacatccttcttgatgtatcagaaaatgaaccatttag----------act 42508921  T
Q  210 attggttccattttgttgatattatcattccttagattgttaaga------ttttttcataggtacacgattgtttagatttcaattaattaatttgatg 303  Q
     |||| |||||||||||||||||||||||||||| ||||||||||      ||||||  || ||||||||||||||||||||||||||||||||||||||    
T  42508922 gttggctccattttgttgatattatcattccttatattgttaagatttttttttttttttaagtacacgattgtttagatttcaattaattaatttgatg 42509021  T
Q  304 agtattatactaa-----------ttcattatgcacacttaatttgacacattaattctctcttgtg 359  Q
    || | || |||||           |||||||||||||||||||| ||||||||||||||||||||||    
T  42509022 agaaata-actaatgtagtataatttcattatgcacacttaattcgacacattaattctctcttgtg 42509087  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 304 - 359
Target Start/End: Original strand, 42518478 - 42518533
Alignment:
Q  304 agtattatactaattcattatgcacacttaatttgacacattaattctctcttgtg 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42518478 agtattatactaattcattatgcacacttaatttgacacattaattctctcttgtg 42518533  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 42518666 - 42518707
Alignment:
Q  392 agaaaacaaatgttgtaaaagtacatcatcagcctacttact 433  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42518666 agaaaacaaatgttgtaaaagtacatcatcagcctacttact 42518707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 42509237 - 42509305
Alignment:
Q  355 ttgtgttgagttgtactct---acgagtatctg-atgtttaagaaaacaaatgttgtaaaagtacatca 419  Q
    |||||||||||||||||||   |||||| || | ||||||||||||||||| |||||||||||||||||    
T  42509237 ttgtgttgagttgtactcttctacgagtttcagtatgtttaagaaaacaaacgttgtaaaagtacatca 42509305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 42524839 - 42524869
Alignment:
Q  14 ttctctaggttttaaatttaatctcatctac 44  Q
    |||||||||||||||||||||||||||||||    
T  42524839 ttctctaggttttaaatttaatctcatctac 42524869  T

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