View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17315_high_13 (Length: 388)
Name: NF17315_high_13
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 377
Target Start/End: Complemental strand, 41916370 - 41916006
Alignment:
| Q |
15 |
tcatcaaggaccacaagtaaagaaattattcattcaaaa-agttagatattttaattttcaacacattaatcacataaatttgtataaaaacttattatt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41916370 |
tcatcaaggaccacaagtaaagaaattattcattcaaaagagttagatattttaattttcaacacattaatcccataaatttgtataaaaacttattatt |
41916271 |
T |
|
| Q |
114 |
taaggtccttatgtgctattacccttcaaaattaaggaggctaaa-cttcagtttagataattatgtagaaagaggaaatccacttgaaacaatctat-g |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |
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| T |
41916270 |
taaggtccttatgtgctattacccttcaaaattaaggaggcaaaagcttcagtttagataattacgtataaagaggaaatccacttgaaacaatctatgg |
41916171 |
T |
|
| Q |
212 |
gatatgaattaacgatagcatgttgatatgttccttctaacgtgtaaagcataaagttcatg----agttcaacaaatatttacggaaggttcacaacgg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || | || || |||| |
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| T |
41916170 |
gatatgaattaacgatagcatgttgatatgttccttctaacgtgtaaagcataaagttcatgaattagttc--tcaattttcaacaaatatt---tacgg |
41916076 |
T |
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| Q |
308 |
aaggttcacagttggccaaggttcaccgttttgtgggttaaatattcttttacatcaggcttggcttcat |
377 |
Q |
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| T |
41916075 |
aaggttcacagttggccaaggttgaccgttttgtgggttaaatattcttttacatcaggcttggcttcat |
41916006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 25331420 - 25331465
Alignment:
| Q |
36 |
gaaattattcattcaaaaagttagatattttaattttcaacacatt |
81 |
Q |
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| T |
25331420 |
gaaattatttttttaaaaagttaaatattttaattttcaacacatt |
25331465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 30910526 - 30910355
Alignment:
| Q |
27 |
acaagtaaagaaattattcattcaaaaagttagatattttaattttcaacacattaatcacataaatttgtataaaaacttattatttaaggtccttatg |
126 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| | |
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| T |
30910526 |
acaagttaagaaattattcattcaaaaagttaaatattttaatttttaacacattaattacataaatttttataaaaacttattatttaaggtccttaag |
30910427 |
T |
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| Q |
127 |
tgc--tattacccttcaaaattaaggaggctaaacttcagtttagataattatgtagaaagaggaaatccac |
196 |
Q |
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| T |
30910426 |
tacctcgttaccctttaaaattaaagaggcaaaacttcaactttgaaaattatgtagaaagaggaaatccac |
30910355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 30910330 - 30910270
Alignment:
| Q |
204 |
aatctatgg-atatgaattaacgatagcatgttgatatgttccttctaacgtgtaaagcat |
263 |
Q |
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| T |
30910330 |
aatctatgggatatgaattaaccatcgcatgttcatatgtttcttctaacgtgtgaagcat |
30910270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 9049235 - 9049149
Alignment:
| Q |
38 |
aattattcattcaaaaagttagatattttaattttcaacacattaatcacataaatttgtataaaaacttattatttaaggtcctta |
124 |
Q |
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| T |
9049235 |
aattattcttttaaaatgttaaatttttcaattttcaatgcattaattacacaaatttttataaaaagttattatttaaggttctta |
9049149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 63900 - 63976
Alignment:
| Q |
32 |
taaagaaattattcattcaaaaagttagatattttaattttcaacacattaatcacataaatttgtataaaaactta |
108 |
Q |
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| T |
63900 |
taaagaaattattctttaaaaaagtcaaaaattttaatttttaatacattaatttcataaattttgacaaaaactta |
63976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 37129901 - 37129840
Alignment:
| Q |
34 |
aagaaattattcattcaaaaagttagatattttaattttcaacacattaatcacataaattt |
95 |
Q |
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|||||||||||| || ||||||||| |||||| ||||| ||| |||||||| ||||| |||| |
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| T |
37129901 |
aagaaattattctttaaaaaagttaaatatttcaatttacaagacattaattacatacattt |
37129840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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