View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17315_high_19 (Length: 309)
Name: NF17315_high_19
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 28476696 - 28476416
Alignment:
| Q |
11 |
cagagaatcctttgattttgaaacaaaatgttaaggaacttcctttagcaagcgaagaaatgggaggaaaacgcctcttcgtagatatttctgttccgag |
110 |
Q |
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| T |
28476696 |
cagagaatcctttgatttttaaacaaaatgttaaggaacttcctttagcaagcgaagaaatgggaggaaaacgcctcttcgtagatatttctgttccgag |
28476597 |
T |
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| Q |
111 |
aaacgtaggttcatgtgtcgatgaccttgagtctgttaaggtttacaatgttgatgaccttaaagaggttgtggctgccaacaaagaggataggctaaga |
210 |
Q |
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| T |
28476596 |
aaacgtaggttcatgtgtcgatgaccttgagtctgttaaggtttacaatgttgatgatcttaaagaggttgtggctgccaacaaagaggataggctaaga |
28476497 |
T |
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| Q |
211 |
aaagcaatggaagcacaagtgatcatcggcgaagaatcgggacaatttgaagcttggagagactcattagaaactgttcca |
291 |
Q |
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| T |
28476496 |
aaagcaatggaagcacaagtgatcatcggcgaagaatcgggacaatttgaagcttggagagactcattagaaactgttcca |
28476416 |
T |
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Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 97 - 290
Target Start/End: Original strand, 51958044 - 51958237
Alignment:
| Q |
97 |
atttctgttccgagaaacgtaggttcatgtgtcgatgaccttgagtctgttaaggtttacaatgttgatgaccttaaagaggttgtggctgccaacaaag |
196 |
Q |
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||||||||||| |||| || |||||||||||| || |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51958044 |
atttctgttcctcgaaatgttggttcatgtgtctcagatattgaatctgttcgagtttacaatgttgatgaccttaaagaggttgtggctgccaacaaag |
51958143 |
T |
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| Q |
197 |
aggataggctaagaaaagcaatggaagcacaagtgatcatcggcgaagaatcgggacaatttgaagcttggagagactcattagaaactgttcc |
290 |
Q |
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| T |
51958144 |
aggatcggcttagaaaagcaatggaagcgcaggcgatcattggtgaagagttgaaacaatttgaagcttggagagactcactggaaactgttcc |
51958237 |
T |
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