View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17315_high_25 (Length: 251)
Name: NF17315_high_25
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_high_25 |
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| [»] scaffold0108 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 12417098 - 12417321
Alignment:
| Q |
16 |
aataaaacactattgagcttgaattatactaaaaaggaagcaaatggaacaagcctagagaaatagaaaattaaatttcgttgaaatttatttgatttca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12417098 |
aataaaacactattgagcttgaattatactaaaaaggaagcaaatggaacaagcctagagaaatagaaaattaaatttcattgaaatttatttgatttca |
12417197 |
T |
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| Q |
116 |
atgaatcatttcttgttcaaaattatcaaatgcttgcacatttgtactttcaacttctcattaatctcaattggatttttgtaagccaaagcttaacaaa |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12417198 |
atgaatcatttcttattcaaaattatcaaatgcttgcacatttgtactttcaacttctcattaatctcaattggatttttgtaagccaaagcttaacaaa |
12417297 |
T |
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| Q |
216 |
catatacatattttagtttatatt |
239 |
Q |
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|||||||||||||||||||||||| |
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| T |
12417298 |
catatacatattttagtttatatt |
12417321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 25012861 - 25012642
Alignment:
| Q |
19 |
aaaacactattgagcttgaattatactaaaaaggaagcaaatggaacaagcctagagaaatagaaaattaaatttcgttgaaatttatttgatttcaatg |
118 |
Q |
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||||||||||||||||||| || ||| |||| ||||||||||||| || | |||||||| ||| || |||||||| |||||||||| ||||||| |||| |
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| T |
25012861 |
aaaacactattgagcttgattt-tacaaaaagggaagcaaatggatcacacatagagaaaaagacaaataaatttcattgaaatttaattgatttaaatg |
25012763 |
T |
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| Q |
119 |
aatcatttcttgttcaaaattatcaaatgcttgcacatttgtactttcaacttctcattaatctcaattggatttttgt-aagccaaagcttaacaaaca |
217 |
Q |
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| T |
25012762 |
aatcatttattgttcaaaattatcagatgcttgcatttacctactttcatcttttctttaagctcgattggattttttttaagtcaaag-ttaaaaagta |
25012664 |
T |
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| Q |
218 |
tatacatattttagtttatatt |
239 |
Q |
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||||||||||||||| ||||| |
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| T |
25012663 |
gatacatattttagttcatatt |
25012642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 19326 - 19523
Alignment:
| Q |
15 |
aaataaaacactattgagcttgaattatactaaaaa--ggaagcaaatggaacaagcctagagaaatagaaaattaaatttcgttgaaatttatttgatt |
112 |
Q |
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|||||||| |||||||||||| ||| |||| |||| ||||| ||||||| ||| | ||||||||||||||| || ||||| |||||||||| | |||| |
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| T |
19326 |
aaataaaagcctattgagcttggattgtactcaaaaagggaagaaaatggatcaaacatagagaaatagaaaaatatatttcattgaaatttaatcgatt |
19425 |
T |
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| Q |
113 |
tcaatgaatcatttcttgttcaaaattatcaaatgcttgcacatttgtactttcaacttctcattaatctcaattggatttttgtaagccaaagctta |
210 |
Q |
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| ||| ||| |||| |||||||| | |||||| ||||||| | |||| ||||||| | | |||| |||||||| |||| ||||||| |||||||| |
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| T |
19426 |
taaattaatgatttattgttcaataccgtcaaatacttgcacttctgtagtttcaacgtttttttaagctcaattgaatttatgtaagcaaaagctta |
19523 |
T |
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