View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17315_high_32 (Length: 220)
Name: NF17315_high_32
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 32179552 - 32179684
Alignment:
| Q |
70 |
tattattactttaaattttcaaggtaatttcaattactttaaactctacctaatgtcatttgcatctctctaatgtcattattttctattatgcatttat |
169 |
Q |
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| T |
32179552 |
tattattactttaaactttcaaggtaatt-caattactttaaactctacctaatgtcatttgcacctctctaatgttattattttctattatgcatttat |
32179650 |
T |
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| Q |
170 |
aataatgaaaaaacatcaatagtttgttataaat |
203 |
Q |
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| T |
32179651 |
aataatgaaaaaacatcaatagtttgttataaat |
32179684 |
T |
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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 32179483 - 32179526
Alignment:
| Q |
1 |
aatgttcgttttttaaagagttccataataatcgttatatttgt |
44 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
32179483 |
aatgatcgttttttaaagagttccataattatcgttatatttgt |
32179526 |
T |
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