View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17315_high_4 (Length: 625)
Name: NF17315_high_4
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 15 - 609
Target Start/End: Original strand, 19240212 - 19240806
Alignment:
| Q |
15 |
ataaggggatatggggtgcaatgatttctggttatgtgcaaaatagttgctttaaggaaagtctttatttgtttcgtttgatgcagttgactgatatagt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19240212 |
ataaggggatatggggtgcaatgatttctggttatgtgcaaaatagttgctttaaggaaagtctttatttgtttcgtttgatgcagttgactgatatagt |
19240311 |
T |
|
| Q |
115 |
tccagatgaatctatatttgtgagcattctttctgcttgtgctcatctaggtgctttggatattggtgtttggattcatcgatatttgaatcgatcgaag |
214 |
Q |
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|| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| || ||| |
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| T |
19240312 |
accggatgagtctatatttgtgagtattctctctgcttgtgctcatctaggtgctttggaaattggtgtttggattcatcaacatttgaatcaattaaag |
19240411 |
T |
|
| Q |
215 |
ctagtaccattgagtgttcgtttgaatactagtttattagatatgtatgcaaaatgtgggaatttggaattggcgaaaagattatttgattcaatgaaag |
314 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
19240412 |
ctagtaccattgagtgttcgtttgagtactagtttattagatatgtacgctaaatgtgggaatttggaattggcgaaaagattattcgattcaatgaaca |
19240511 |
T |
|
| Q |
315 |
tgagagacgttgtatgttggaatgctatgatttctggtatggcaatgcatggagatgggaaaggtgcactcatgctgttttacgatatggaaaatgccgg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | || |
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| T |
19240512 |
tgagagacgttgtatgttggaatgctatgatttctggtatggcaatgcatggagatgggaaaggtgccctcaagctgttttacgatatggaaaaggttgg |
19240611 |
T |
|
| Q |
415 |
ggtaaaacctgatgatataacattcattgctgtttttactgcttgtagttactcagggatggcgtatgaaggtttgaagttgttggataaaatgtgcagt |
514 |
Q |
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| T |
19240612 |
ggtgaaacctgatgatataacatttattgctgtttttactgcttgtagttactcgggaatggcgtatgaaggtttgatgttgttggataaaatgtgtagt |
19240711 |
T |
|
| Q |
515 |
gtttacagcattggaccaaagagtgaacattatggttgtttggttgatttactaagtagagcagggcattttgaagaagctatggtaatgataag |
609 |
Q |
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||||||| ||||| ||||| |||||||| ||||||||||| |||||||| ||||| || ||||||| ||||||||||||||||||||||||||| |
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| T |
19240712 |
gtttacaacattgtgccaaaaagtgaacactatggttgtttagttgatttgctaagcagggcagggctttttgaagaagctatggtaatgataag |
19240806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 19243251 - 19243405
Alignment:
| Q |
23 |
atatggggtgcaatgatttctggttatgtgcaaaatagttgctttaaggaaagtctttatttgtttcgtttgatgcagttgactgatatagttccagatg |
122 |
Q |
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| T |
19243251 |
atatggggtgcaatggtttctggttatgtgcaaaatagttgctttaaggaaagtctttatttgtttcgtttgatgcagttgactgatatagtacctgatg |
19243350 |
T |
|
| Q |
123 |
aatctatatttgtgagcattctttctgcttgtgctcatctaggtgctttggatattgg |
180 |
Q |
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| |||||||||||||| | ||||||||||||||||||||||||||||||| |||| |
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| T |
19243351 |
agtctatatttgtgag---taattctgcttgtgctcatctaggtgctttggatgttgg |
19243405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 19243434 - 19243479
Alignment:
| Q |
107 |
gatatagttccagatgaatctatatttgtgagcattctttctgctt |
152 |
Q |
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| T |
19243434 |
gatatagtaccggatgagtctatatttgtgagcattctttgtgctt |
19243479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 152 - 306
Target Start/End: Complemental strand, 32553236 - 32553092
Alignment:
| Q |
152 |
tgtgctcatctaggtgctttggatattggtgtttggattcatcgatatttgaatcgatcgaagctagtaccattgagtgttcgtttgaatactagtttat |
251 |
Q |
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| T |
32553236 |
tgtgctcatctaggtgctttggatattggtgtttggatccatcgatgtttgaatcgaataaagctagtaacgttgactgttcgtttgaggactagttt-- |
32553139 |
T |
|
| Q |
252 |
tagatatgtatgcaaaatgtgggaatttggaattggcgaaaagattatttgattc |
306 |
Q |
| |
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|| || ||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
32553138 |
--------tacgctaaatgtgggaatttgaaattggcgaaaagattattcgattc |
32553092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 152 - 306
Target Start/End: Complemental strand, 39174058 - 39173914
Alignment:
| Q |
152 |
tgtgctcatctaggtgctttggatattggtgtttggattcatcgatatttgaatcgatcgaagctagtaccattgagtgttcgtttgaatactagtttat |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||| | |||| ||||||||||| |||||||| |
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| T |
39174058 |
tgtgctcatctaggtgctttggatattggtgtttggatccatcgatgtttgaatcgaataaagctagtaacgttgactgttcgtttgaggactagttt-- |
39173961 |
T |
|
| Q |
252 |
tagatatgtatgcaaaatgtgggaatttggaattggcgaaaagattatttgattc |
306 |
Q |
| |
|
|| || ||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
39173960 |
--------tacgctaaatgtgggaatttgaaattggcgaaaagattattcgattc |
39173914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 35800259 - 35800327
Alignment:
| Q |
166 |
tgctttggatattggtgtttggattcatcgatatttgaatcgatcgaagctagtaccattgagtgttcg |
234 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||||||||| ||||||||| | |||| |||||| |
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| T |
35800259 |
tgctttggatattggtgtttggatccatcgatgtttgaatcgaataaagctagtaacgttgattgttcg |
35800327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 152 - 249
Target Start/End: Complemental strand, 23233012 - 23232915
Alignment:
| Q |
152 |
tgtgctcatctaggtgctttggatattggtgtttggattcatcgatatttgaatcgatcgaagctagtaccattgagtgttcgtttgaatactagttt |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| ||||||||| |||| ||||||||||| |||||||| |
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| T |
23233012 |
tgtgctcatctaggtgctttggatattggtgtttggatccatcgatgtttgaattgattaaagctagtaaagttgactgttcgtttgaggactagttt |
23232915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 23232887 - 23232823
Alignment:
| Q |
242 |
actagtttattagatatgtatgcaaaatgtgggaatttggaattggcgaaaagattatttgattc |
306 |
Q |
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|||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
23232887 |
actagtttattagatatgtacgctaaatgtgggaatttgaaattggcgaaaagattattcgattc |
23232823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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