View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17315_high_5 (Length: 571)
Name: NF17315_high_5
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 14 - 556
Target Start/End: Original strand, 35296089 - 35296629
Alignment:
| Q |
14 |
aatatcatcaacaccatcgatttctaactaaaacaatctgaaggaaaaaaatcaaacaacctcnnnnnnnnnnnnnnttaaaccaaggatttttctcaca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
35296089 |
aatatcatcaacaccatcgatttctaactataacaatctgaagaaaaaaaatcaaacaacctcaaaaaaaaaaaaa-ttaaaccaaagatttttctcaca |
35296187 |
T |
|
| Q |
114 |
gtaactcatctctttctgtttgtccaatcattgcaaaaacaacacacaccaagggtttttcttttcaatcaaaccatgttttcatcttaattaacttcaa |
213 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35296188 |
gtaactcatctctttctgtctgtccaatcattgcaaaaacaacacacaccaagggtttttcttttcaatcaaaccatgttttcatcttaattaacttcaa |
35296287 |
T |
|
| Q |
214 |
ttttaaatttaattgaaaggaattaattaggggtagtgtgaatcaatttcaatctgcaacaatcttcaactttcttgatacttccattttaaagctgcag |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35296288 |
ttttaaatttaattgaaaggaattaattaggggtagtgtgaatcaatttcaatctgcaacaatcttcaactttctagatacttccattttaaagctgcag |
35296387 |
T |
|
| Q |
314 |
ttgggaattcttgaagacacgtgcagtgtgaaagtgaaatcgttcaaggcaaaattcctcccggcagcccttccgttctcattctctcttcttcgctatg |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35296388 |
ttgggaattcttgaagacacgtgcagtgtgaaagtgaaatcgttcaaggcaaaattcctcccggcagccattccgttctcattctctcttcttcgctatg |
35296487 |
T |
|
| Q |
414 |
taatctcgagatttgtcatcgtcttctccttcctcaaccaccaaccgcgacgctccttccgtctgctctgannnnnnnactcaaatttgagggtttttgt |
513 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35296488 |
taatctcgagatttatcatcgtcttctccttcctcaaccaccaaccgcgacgctccttccgtctgctctga-ttttttactcaaatttgagggtttttgt |
35296586 |
T |
|
| Q |
514 |
tgttggtgatgattcaaatcgaaagattagaagggatttaggt |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35296587 |
tgttggtgatgattcaaatcgaaagattagaagggatttaggt |
35296629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 14 - 556
Target Start/End: Complemental strand, 14744906 - 14744366
Alignment:
| Q |
14 |
aatatcatcaacaccatcgatttctaactaaaacaatctgaaggaaaaaaatcaaacaacctcnnnnnnnnnnnnnnttaaaccaaggatttttctcaca |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
14744906 |
aatatcatcaacaccattgatttctaactataagaatctgaagaaaaaaaatcaaacaacctcacaaaaaaaaaaa-ttaaaccaaggatttttctcaga |
14744808 |
T |
|
| Q |
114 |
gtaactcatctctttctgtttgtccaatcattgcaaaaacaacacacaccaagggtttttcttttcaatcaaaccatgttttcatcttaattaacttcaa |
213 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14744807 |
gtaactcatctctttctatctgtccaatcattgcaaaaacaacacacaccaagggtttttcttttcaatcaaaccatgttttcatcttaattaacttcaa |
14744708 |
T |
|
| Q |
214 |
ttttaaatttaattgaaaggaattaattaggggtagtgtgaatcaatttcaatctgcaacaatcttcaactttcttgatacttccattttaaagctgcag |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
14744707 |
ttttaaatttaattgaaaggaattaattaggggtagtgtgaatcaatttcaatctgcaacaatcttcaactttctagatacctccattttaaagctgcag |
14744608 |
T |
|
| Q |
314 |
ttgggaattcttgaagacacgtgcagtgtgaaagtgaaatcgttcaaggcaaaattcctcccggcagcccttccgttctcattctctcttcttcgctatg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14744607 |
ttgggaattcttgaagacacgtgcagtgtgaaagtgaaatcgttcaaggcaaaattcctcccggcagcccttccgttctcattctctcttcttcgctatg |
14744508 |
T |
|
| Q |
414 |
taatctcgagatttgtcatcgtcttctccttcctcaaccaccaaccgcgacgctccttccgtctgctctgannnnnnnactcaaatttgagggtttttgt |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |||||||||||||||||||||| |
|
|
| T |
14744507 |
taatctcgagatttgtcatcgtcttctccttcctcaaccaccaatcgcgacgctccttctgtcagctctga-ttttttactcaaatttgagggtttttgt |
14744409 |
T |
|
| Q |
514 |
tgttggtgatgattcaaatcgaaagattagaagggatttaggt |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14744408 |
tgttggtgatgattcaaatcgaaagattagaagggatttaggt |
14744366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 302 - 392
Target Start/End: Original strand, 52862623 - 52862713
Alignment:
| Q |
302 |
ttaaagctgcagttgggaattcttgaagacacgtgcagtgtgaaagtgaaatcgttcaaggcaaaattcctcccggcagcccttccgttct |
392 |
Q |
| |
|
|||||| |||| ||||||||| ||| ||||| |||| ||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
52862623 |
ttaaaggtgcatttgggaattgttggagacaggtgctgtgtgaaagtgaagtcgttgaaggcaaaatccctcccggcagcccttccgttct |
52862713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 406 - 474
Target Start/End: Original strand, 47634511 - 47634579
Alignment:
| Q |
406 |
tcgctatgtaatctcgagatttgtcatcgtcttctccttcctcaaccaccaaccgcgacgctccttccg |
474 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
47634511 |
tcgctatggaatctcgagatttgacatcgtcttctccttcttcaaccaccaaccgcgactctccttccg |
47634579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 47634356 - 47634403
Alignment:
| Q |
183 |
caaaccatgttttcatcttaattaacttcaattttaaatttaattgaaa |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
47634356 |
caaaccatgttttcatcttaattaacttcaa-tttaaatgtaattgaaa |
47634403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University