View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17315_low_11 (Length: 415)
Name: NF17315_low_11
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_low_11 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 5509392 - 5509806
Alignment:
| Q |
1 |
aaagtttccattgcttttgatttggactgttttacccttaactcagctacttccaaccatgatttgaaattgttaaaacctatgattgagtttcttcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5509392 |
aaagtttccattgcttttgatttggactgttttacccttaactcagctacttccaaccatgatttgaaaatgttaaaacctatgattgagtttcttcaaa |
5509491 |
T |
|
| Q |
101 |
ctgttaactcaacattttctctcataccaagttcaaagttttcacatttttctgataaaagtttgaactttgtgtcttcccatttagaatccatgaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5509492 |
ctgttaactcaacattttctctcataccaagttcaaagttttcacatttttctgataaaagtttgaactttgtgtcttcccatttagaatccatgaaaaa |
5509591 |
T |
|
| Q |
201 |
gcttggatttttcaaccataacaatatcataaacattgctaccattgtcccaaaagagagaaaaatcactactagaaaactttcagttaccacaatccct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5509592 |
gcttggatttttcaaccataacaatatcataaacattgctaccattgtcccaaaagagagaaaaatcactattagaaaactttcagttaccacaatccct |
5509691 |
T |
|
| Q |
301 |
ataaaaccaagcccaattccagaaattgctcaaccccctttggatttccctgctggttcaccttatccagctccttacaatgtaccaaattcaaaaccat |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5509692 |
ataaaaccaaccccaattccagaaattgctcaaccccctttggatttccctgctggttcaccttatccagctccttacaatgtaccaaatccaaaaccat |
5509791 |
T |
|
| Q |
401 |
taccacctttagctc |
415 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5509792 |
taccacctttagctc |
5509806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 20432696 - 20432989
Alignment:
| Q |
1 |
aaagtttccattgcttttgatttggactgttttacccttaactcagctacttccaaccatgatttgaaattgttaaaacctatgattgagtttcttcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20432696 |
aaagtttccattgcttttgatttggactgttttacccttaactcagctacttccaaccatgatttgaaaatgttaaaacctatgattgagtttcttcaaa |
20432795 |
T |
|
| Q |
101 |
ctgttaactcaacattttctctcataccaagttcaaagttttcacatttttctgataaaagtttgaactttgtgtcttcccatttagaatccatgaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20432796 |
ctgttaactcaacattttctctcataccaagttcaaggttttcacatttttctgataaaggttcaaactttgtgtcttcccatttagaatccatgaaaaa |
20432895 |
T |
|
| Q |
201 |
gcttggatttttcaaccataacaatatcataaacattgctaccattgtcccaaaagagagaaaaatcactactagaaaactttcagttaccacaat |
296 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20432896 |
gcttggatttttcagcc--accaatatcataaacattgctaccattgtaccaaaagagataaaaatcactactagaaaactttcagttaccacaat |
20432989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University