View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17315_low_12 (Length: 401)
Name: NF17315_low_12
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 6 - 303
Target Start/End: Original strand, 4607794 - 4608087
Alignment:
| Q |
6 |
acttaactcatagtcttattttggtttgaaactatactcaaatgtgaagaaaatatactcaaatgggtttttgaaatgaaactatactcaatgagttttt |
105 |
Q |
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| T |
4607794 |
acttaactcatagtcttattttggtttgaaactatactcaaatgtgaagaaaatatactcaaatgggtttttgaaatgaaactatactcaatgagttttt |
4607893 |
T |
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| Q |
106 |
tgaactagaagaaaactctttctaactagctagctcacgggtttctttgttttttagtgggtatctttcatacgtaatagtacacattgttccagaaagt |
205 |
Q |
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| T |
4607894 |
tgaactagaagaaaactctttctaactag----ctcacgggtttctttgttttttagtgggtatctttcatacgtaatagtacacattgttccagaaagt |
4607989 |
T |
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| Q |
206 |
tttccaattgttgttgaaaccatttgacagtgattttttagattgttattgggtgagttgaaagtactttttgaatttaagattagatatcatatgaa |
303 |
Q |
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| T |
4607990 |
tttccaattgttgttggaaccatttgccagtgattttttagattgttattgggtgagttgaaagtactttttgaatttaagattagatatcatatgaa |
4608087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 348 - 385
Target Start/End: Original strand, 4608132 - 4608169
Alignment:
| Q |
348 |
cctatgattaatgttattatgttttgtctctaattctt |
385 |
Q |
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| T |
4608132 |
cctatgattaatgttattatgttttgtctctaattctt |
4608169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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