View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17315_low_14 (Length: 370)
Name: NF17315_low_14
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 23 - 355
Target Start/End: Complemental strand, 452008 - 451676
Alignment:
| Q |
23 |
ttctacaatcttccaactccctcactttaggaaaacaacttcactcacactcaattaaaactggtttttacaaccacaactttgttcaaaccaagttact |
122 |
Q |
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| T |
452008 |
ttctacaatcttccaactccctcactttaggaaaacaacttcactcacactcaattaaaactggtttttacaaccacaactttgttcaaaccaagttact |
451909 |
T |
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| Q |
123 |
tcaaatgtactccattaactcctctttcgaagacgcctggcacatgttcgataaaatgactcttaaaaacttgcattcttggactgcggttttacgtctt |
222 |
Q |
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| T |
451908 |
tcaaatgtactccattaactcctctttcgaagacgcctggcacatgttcgataaaatgactcttaaaaacttgcattcttggactgcggttttacgtctt |
451809 |
T |
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| Q |
223 |
catcttaacatggggttgttttacaaaggttttatgctttttgaagaatttttatgtgatgggctgggagaaaaattggannnnnnngtgtttccggttg |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
451808 |
catcttaacatggggttgttttacaaaggttttatgctttttgaagagtttttatgtgatgggctgggagaaaaattggatttttttgtgtttccggttg |
451709 |
T |
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| Q |
323 |
ttttgaacatttgttgtggtctcggtgatttgg |
355 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
451708 |
ttttgaacatttgttgtggtctcggtgatttgg |
451676 |
T |
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