View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17315_low_16 (Length: 358)
Name: NF17315_low_16
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 51149823 - 51150178
Alignment:
| Q |
1 |
ctactataacctctgttgcctttgactcctctttttactcacaagtcacatcctctctccctctttctccttcataaaaccggataacatttggttgata |
100 |
Q |
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| T |
51149823 |
ctactataacctctgttgcctttgactcctctttttactcacaagtcacatcctctctccctctttctccttcataaaatcggataacatttggttgata |
51149922 |
T |
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| Q |
101 |
ttggagtttcagtatcatttgacattaaccaaccgcaatgttacaaatatatnnnnnnnnnnnnnnnttataacttttttctatctttgttacaaggann |
200 |
Q |
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| T |
51149923 |
ttggagtcttaatgtcatttgacattatccaaccgcaatgttacaaatatataaaaaagataaaaaattatgacttttttctctcttcgttacaatgatt |
51150022 |
T |
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| Q |
201 |
nnnnngtcaaatgacactgacaccggagtactgattaagatagtaaaatttttaatcattaagataaaattaatttttattgaaagaagtgattagttaa |
300 |
Q |
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| T |
51150023 |
tttttgtcaaatgacattgacaccggagtattaattaagatagtaaaaattttaatcat--agataaaattaatttttattgaaaagagtgattagttaa |
51150120 |
T |
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| Q |
301 |
gagaaagatagagataaaatcatcggtatcacaaaaattcaatttcattcaagtataa |
358 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51150121 |
gagaaagatagagataaaatcattggtatcacaaaaattcaatttcattcaagtataa |
51150178 |
T |
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