View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17315_low_18 (Length: 350)
Name: NF17315_low_18
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 7822584 - 7822903
Alignment:
| Q |
20 |
ttaattcaaacttaagcaactcaaatagattgtatcaaacagtaataacatcaatcaatatgaaa-ggaaaaataaatcaagcatgtg--gaaattaagc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| |
|
|
| T |
7822584 |
ttaattcaaacttaagcaactcaaatagattgtatcaaacagtaataacatcaatcaatatgaaaaggaaaaataaaccaagcatgtgtggaaattaagc |
7822683 |
T |
|
| Q |
117 |
ctgattgaagggattgaaaaagaactatgaatacaatatcacatgcatgcatatgaatcaatattataagaacatgatgcatattgaaatttagaaatat |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7822684 |
ctgatcgaagggattgaaaaagaactatgaatacaatatcacatacatgcatatgaatcaatattataagaacatgatgcatattgaaatttagaaatat |
7822783 |
T |
|
| Q |
217 |
gataaataatagacataaaatagaaaatacttatataacatgagaatcatgcatatcgaaatttcatacaaaccaataattaaaagtcattgaattacct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7822784 |
gataaataatagacataaaatagaaaatacttatataacatgagaatcatgcatatcgaaatttcatacaaaccaataattaaaagtcattgaattacct |
7822883 |
T |
|
| Q |
317 |
ttatgtttacgggaacatat |
336 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
7822884 |
ttatgtttacgggaacatat |
7822903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 184 - 301
Target Start/End: Original strand, 7873356 - 7873474
Alignment:
| Q |
184 |
aagaacatgatgcatattgaaatttagaaatatgataaataatagacat-aaaatagaaaatacttatataacatgagaatcatgcatatcgaaatttca |
282 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
7873356 |
aagaacatgatgcatatcaaaatttagaaatatgataaataatatacatgaaaatagaaaatacttatataacatgaaaggcatgcatatcgaaatttca |
7873455 |
T |
|
| Q |
283 |
tacaaaccaataattaaaa |
301 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
7873456 |
tacaaaccaagaattaaaa |
7873474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 17830385 - 17830471
Alignment:
| Q |
18 |
ccttaattcaaacttaagcaactcaaatagattgtatcaaacagtaataacatcaatcaatatgaaaggaaaaataaatcaagcatg |
104 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| | |||||||| || ||||||||||||||||||||||| |||||||| |
|
|
| T |
17830385 |
ccttaattcaaacttaagcaactcaaacatattgtattaggcagtaatattctcgatcaatatgaaaggaaaaataaaccaagcatg |
17830471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 336
Target Start/End: Complemental strand, 41858596 - 41858558
Alignment:
| Q |
298 |
aaaagtcattgaattacctttatgtttacgggaacatat |
336 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
41858596 |
aaaagtcattgaattacctttctgtttacaggaacatat |
41858558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 17830530 - 17830579
Alignment:
| Q |
149 |
acaatatcacatgcatgcatatgaatcaatattataagaacatgatgcat |
198 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
17830530 |
acaatatctcatacatgcatatgaatcaatattatacaaacatggtgcat |
17830579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University