View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17315_low_2 (Length: 645)
Name: NF17315_low_2
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 188 - 630
Target Start/End: Original strand, 45888308 - 45888751
Alignment:
| Q |
188 |
cttaattgtctaacaagttaccaaatgacaacacatataaaaatgaaatcttataaccaaaaggaatatttaggtaaagtatcaatacattactgaaaat |
287 |
Q |
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| T |
45888308 |
cttaattgtctaacaagttaccaaatgacaacacatatacaaatgaaatcttataaccaaaaggaatatttaagtaaa-tatcaatacattactgaaaat |
45888406 |
T |
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| Q |
288 |
tgactaaactaacttgacttggatcaatcacaaccccgtggactgacgctgaccggcgttgtcttgcagtaggagacgatggtagttggatcttttgagg |
387 |
Q |
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| T |
45888407 |
tgactaaactaacttgacttggatcaatcacaaccccgtggactaacgctgaccggcgttgtcttgcagtaggagacgatggtagttggatcttttgagg |
45888506 |
T |
|
| Q |
388 |
aagaggagctttctgcgagtggccaacgatgcaaagagcgccagtgtcatcttgctcccagtatacttgtaccataaaccctgtgggatattcagcagac |
487 |
Q |
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| T |
45888507 |
aacaggagctttctgcgagtggccagcgatgcaaagagcgccagtgtcatcttgctcccagtgtacttgtaccataaaccctgtgggatattcagcagac |
45888606 |
T |
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| Q |
488 |
tctgatccaggaattcccacaatcatagctcctactggaatctgcacaattattttattcatcagcaaaaatagttagttgttacagctacaa--tttgt |
585 |
Q |
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| T |
45888607 |
tctgatccaggaattcccacaatcatagctcctactggaatctgcacaattattttattcatcagcaaaaatagttagttgttacagctacaaactttgt |
45888706 |
T |
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| Q |
586 |
tcaattgaaaaagaaaatggttttgtattttgtcacgatggatgt |
630 |
Q |
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| T |
45888707 |
tcaattgaaaaagaaaatggttttgtattttgtcacgatggatgt |
45888751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 281 - 558
Target Start/End: Complemental strand, 12985903 - 12985629
Alignment:
| Q |
281 |
tgaaaattgactaaactaacttgacttggatcaatcacaaccccgtggactgacgctgaccggcgttgtcttgcagtaggagacgatggtagttggatct |
380 |
Q |
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|||||| || || ||||||||||| |||||||||||||||| || || |||||| |||||||||||||||||||||||| ||| |||||||||||| | |
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| T |
12985903 |
tgaaaactgtctgaactaacttgatttggatcaatcacaactccatgaactgaccctgaccggcgttgtcttgcagtagcaga---tggtagttggatat |
12985807 |
T |
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| Q |
381 |
tttgaggaagaggagctttctgcgagtggccaacgatgcaaagagcgccagtgtcatcttgctcccagtatacttgtaccataaaccctgtgggatattc |
480 |
Q |
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| T |
12985806 |
tttgaggaataggagctttctgggagtggccggcaacacaaagggtaccggtgtcatcttgctcccaatgcacttctaccataaaacctgtggggtattc |
12985707 |
T |
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| Q |
481 |
agcagactctgatccaggaattcccacaatcatagctcctactggaatctgcacaattattttattcatcagcaaaaa |
558 |
Q |
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|| |||||||||||| |||| ||||||| ||||||||| || |||||||||| |||||||||||||||||||||||| |
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| T |
12985706 |
agtagactctgatccgggaaatcccacatacatagctcccacaggaatctgcaaaattattttattcatcagcaaaaa |
12985629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 45888130 - 45888236
Alignment:
| Q |
10 |
ataatactagtattacattgttaattcttttttataaccttacaaatgtctgtttggctgggcgatacaatgcattgaattttcccccttgaattgaata |
109 |
Q |
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|||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45888130 |
ataatactagtactatattgttaattcttttttataaccttgcaaatgtctgtttggctgggcgatacaatgcattgaattttcccccttgaattgaata |
45888229 |
T |
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| Q |
110 |
tcacaac |
116 |
Q |
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||||||| |
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| T |
45888230 |
tcacaac |
45888236 |
T |
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