View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17315_low_20 (Length: 313)
Name: NF17315_low_20
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 55 - 310
Target Start/End: Complemental strand, 54081795 - 54081544
Alignment:
| Q |
55 |
ctgaattcaaccatggtacaatacaacagtgccatcatctacaactcaaaaagttaaagctatgccaaattacaagtagatatatattggaaattttcat |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
54081795 |
ctgaattcaaccatggtacaatacaacagtgccatcatctacaactcaaaaagttaaagctatgccaaattacaagtagatat----tggaaattttcat |
54081700 |
T |
|
| Q |
155 |
aacaagaagactaaaacaaaaggttgaaattgaaacacaactaatttttcttcactaaaacacacatgatgcatggaatcaaccatctaacgtgttcatt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54081699 |
aacaagaagactaaaacaaaaggttgaaattgaaacacaactaatttttcttcactaaaacacacatgatgcatggaatcaaccatctaacgtgttcatt |
54081600 |
T |
|
| Q |
255 |
atttcattcacactagctgctccttatattttcttttatttgtgtcaaccatatta |
310 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54081599 |
atttcattcacaccagctgctacttatattttcttttatttgtgtcaaccatatta |
54081544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 55 - 240
Target Start/End: Complemental strand, 54085203 - 54085019
Alignment:
| Q |
55 |
ctgaattcaaccatggtacaatacaacagtgccatcatctacaactcaaaaagttaaagctatgccaaattacaagtagatatatattggaaattt---- |
150 |
Q |
| |
|
||||||||| ||||| |||| | ||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
54085203 |
ctgaattcagccatgatacatcattacattgccatcatctacgactcaaaaaactaaagctatgccaaattacaagtagatat----tggaaatttggaa |
54085108 |
T |
|
| Q |
151 |
tcataacaagaa--gactaaaacaaaaggttgaaattgaaacacaactaatttttcttcactaaaacacacatgatgcatggaatcaaccat |
240 |
Q |
| |
|
|||||||| ||| |||||||||||| ||||||| ||||||||||||| |||||| || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
54085107 |
tcataacaggaaaagactaaaacaaa-ggttgaa-ttgaaacacaactgatttttatt-actaaaacacacatgatgcatggcatcaaccat |
54085019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University