View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17315_low_22 (Length: 305)
Name: NF17315_low_22
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_low_22 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 45 - 305
Target Start/End: Original strand, 8156133 - 8156391
Alignment:
| Q |
45 |
gtcatttgcctatttgtggttttggatcatcattcttgtataaatgattgtaatgttcattttcatagtttcattcactaatgagaatatagaattacaa |
144 |
Q |
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| T |
8156133 |
gtcatttggctatttgtggttttggatcatcattcttgtataaatgattgtaatgttcattttcatagtttcattcactaatgagaatatagaattacaa |
8156232 |
T |
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| Q |
145 |
tccattcaatctaactcttttctctctcaatttctccctaaatcatttgttgctagagtaacaagaaaattgttgtgctaacacaaacaacagaacaatc |
244 |
Q |
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| T |
8156233 |
tccattcaatctaactcttttctc--tcaatttctccctaaatcatttgttgctagagtaacaagaaaattgttgtgctaacacaaacaacagaacaatc |
8156330 |
T |
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| Q |
245 |
atgtgctcagttcaacgatcattgattcatacattctacatcatcacagagacttgtggga |
305 |
Q |
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| T |
8156331 |
atgtgctcagttcaacgatcatcgattcatacattctacatcatcacagagacttgtggga |
8156391 |
T |
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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 11399200 - 11399319
Alignment:
| Q |
113 |
tttcattcactaatgagaatatagaattacaatccattcaatctaactcttttctctctcaatttctccctaaatcatttgttgctagagtaacaagaaa |
212 |
Q |
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| T |
11399200 |
tttcattcactactgagaatatagaattacaatcatttgtatctatctcttttctctctcaatttctctataaatcattcatttcttgagtaacaag-ta |
11399298 |
T |
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| Q |
213 |
attgttgtgctaacacaaaca |
233 |
Q |
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| T |
11399299 |
attgctgtgctaacaaaaaca |
11399319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 36614006 - 36614047
Alignment:
| Q |
130 |
aatatagaattacaatccattcaatctaactcttttctctct |
171 |
Q |
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| T |
36614006 |
aatatagaattacaatccattgcatctatctcttttctctct |
36614047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 30915288 - 30915355
Alignment:
| Q |
113 |
tttcattcactaatgagaatatagaattacaatccattcaatctaactcttttctctctcaatttctc |
180 |
Q |
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| T |
30915288 |
tttcattcactaatgagaatatagaattacaatctattgcatatatctcttatctctctcaatttctc |
30915355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 30904475 - 30904542
Alignment:
| Q |
113 |
tttcattcactaatgagaatatagaattacaatccattcaatctaactcttttctctctcaatttctc |
180 |
Q |
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| T |
30904475 |
tttcattcattaatgagaatatagaattacaatctattgcatatatctcttctctctctcaatttctc |
30904542 |
T |
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