View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17315_low_24 (Length: 288)
Name: NF17315_low_24
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_low_24 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 88208 - 88469
Alignment:
| Q |
18 |
aggtgaaagttctagaagttattgaagcagtaagactcggtactaatatgcagccgtttgatgtggtttattttcctcggtcgggtactcctgagttttt |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
88208 |
aggtgaaagctctagaagttattgaagcagtaagactcggtactaatatgcagccgtttgatgtggtttattatcctcggtcgggtactcctgagttttt |
88307 |
T |
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| Q |
118 |
tgtgaaaacttctttaattggaatggcacttcagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
88308 |
tgtgaaaacttctttaattggaatggcacttcagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagt |
88407 |
T |
|
| Q |
218 |
tggtttatcggaactgttgcttctgttcaggctgctgatccgtcatggcctgattctctgtg |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
88408 |
tggtttatcggaactgttgcttctgttcaggctgctgatccgtcatggtctgattctatgtg |
88469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 96216 - 96477
Alignment:
| Q |
18 |
aggtgaaagttctagaagttattgaagcagtaagactcggtactaatatgcagccgtttgatgtggtttattttcctcggtcgggtactcctgagttttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
96216 |
aggtgaaagttctagaagttattgaagcagtaagactcggtactaatatgcagccgtttgatgtggtttattatcctcggtcgggtactcctgagttttt |
96315 |
T |
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| Q |
118 |
tgtgaaaacttctttaattggaatggcacttcagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagt |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
96316 |
tgtgaaaacttctttaattggaatcacacttcagattaggtggtgtcctggaatgaggttcaagatgcccattgaaaccgaggactcatcaaggataagt |
96415 |
T |
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| Q |
218 |
tggtttatcggaactgttgcttctgttcaggctgctgatccgtcatggcctgattctctgtg |
279 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
96416 |
tggtttatcggaactgttgcttctgtgcaggctgctgatccgtcatggcctgattctctgtg |
96477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 40878075 - 40877814
Alignment:
| Q |
18 |
aggtgaaagttctagaagttattgaagcagtaagactcggtactaatatgcagccgtttgatgtggtttattttcctcggtcgggtactcctgagttttt |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40878075 |
aggtgaaagctctagaagttattgaagcagtaagactcggtactaatatgcagccgtttgatgtggtttattatcctcggtcgggtactcctgagttttt |
40877976 |
T |
|
| Q |
118 |
tgtgaaaacttctttaattggaatggcacttcagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40877975 |
tgtgaaaacttctttaattggaatggcacttcagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagt |
40877876 |
T |
|
| Q |
218 |
tggtttatcggaactgttgcttctgttcaggctgctgatccgtcatggcctgattctctgtg |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
40877875 |
tggtttatcggaactgttgcttctgttcaggctgctgatccgtcatggtctgattctatgtg |
40877814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 40870066 - 40869805
Alignment:
| Q |
18 |
aggtgaaagttctagaagttattgaagcagtaagactcggtactaatatgcagccgtttgatgtggtttattttcctcggtcgggtactcctgagttttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40870066 |
aggtgaaagttctagaagttattgaagcagtaagactcggtactaatatgcagccgtttgatgtggtttattatcctcggtcgggtactcctgagttttt |
40869967 |
T |
|
| Q |
118 |
tgtgaaaacttctttaattggaatggcacttcagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagt |
217 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40869966 |
tgtgaaaacttctttaattggaatcacacttcagattaggtggtgtcctggaatgaggttcaagatgcccattgaaaccgaggactcatcaaggataagt |
40869867 |
T |
|
| Q |
218 |
tggtttatcggaactgttgcttctgttcaggctgctgatccgtcatggcctgattctctgtg |
279 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40869866 |
tggtttatcggaactgttgcttctgtgcaggctgctgatccgtcatggcctgattctctgtg |
40869805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 258
Target Start/End: Original strand, 21716267 - 21716367
Alignment:
| Q |
158 |
tggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgatc |
257 |
Q |
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|||||| |||| ||||||||||||||| || ||||||| || ||||| || ||||| ||||||||||| ||||| | ||||||||||||| || ||||| |
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| T |
21716267 |
tggtgttctgggatgaggttcaagatgccctttgaaactgaagactcttctaggattagttggtttatgggaacaatcgcttctgttcaggttgttgatc |
21716366 |
T |
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| Q |
258 |
c |
258 |
Q |
| |
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| |
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| T |
21716367 |
c |
21716367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 28347335 - 28347416
Alignment:
| Q |
149 |
cagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaa |
230 |
Q |
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|||||| | |||||| ||||||| || |||||||||||| ||||||||||||| || || | |||||||||||||| |||| |
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| T |
28347335 |
cagattcgatggtgttctggaataagattcaagatggcctttgaaaccgaggattcgtctcgaataagttggtttatgggaa |
28347416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 42730737 - 42730825
Alignment:
| Q |
158 |
tggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttca |
246 |
Q |
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|||||| |||| ||||| ||||| ||| | ||||||| ||||| || || ||||| ||||||||||| |||||| || |||||||||| |
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| T |
42730737 |
tggtgttctggtatgagattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgttca |
42730825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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