View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17315_low_25 (Length: 277)
Name: NF17315_low_25
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_low_25 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 51 - 277
Target Start/End: Original strand, 34346765 - 34346991
Alignment:
| Q |
51 |
caacacatttgatgggataaacaatcaatgacaaccaaactaaagagtcaaacaaccaattcaacttaaaacaagtctagaatatgagtaaagcaaaatc |
150 |
Q |
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| T |
34346765 |
caacatatttgatgggataaacaatcaatgacaaccaaactaaagagtcaaacaacaaattcaatttaaaacaagtctagaatatgagtaaagcaaaatc |
34346864 |
T |
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| Q |
151 |
acacgaccaatcaaaatcacaaagataatgaacttagagaaataaacgcgcaaagatattgtggnnnnnnncttaggacgtgaaggaaaaataagcgaat |
250 |
Q |
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| T |
34346865 |
acacgaccaatcaaaatcacaaagataaagaaattagagaaataaacgcgcaaagatattgtggaaaaaaacttaggacgtgaaggaaaaataagtaaat |
34346964 |
T |
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| Q |
251 |
taaaaagatagtatatagcaacttatt |
277 |
Q |
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| T |
34346965 |
taaaaagatagtatatagcaacttatt |
34346991 |
T |
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