View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17315_low_3 (Length: 631)

Name: NF17315_low_3
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17315_low_3
NF17315_low_3
[»] chr5 (10 HSPs)
chr5 (12-387)||(5998377-5998752)
chr5 (421-592)||(5998174-5998345)
chr5 (64-133)||(34394653-34394722)
chr5 (174-244)||(34394656-34394726)
chr5 (78-133)||(5396371-5396425)
chr5 (108-144)||(9177935-9177971)
chr5 (105-142)||(7137670-7137707)
chr5 (177-210)||(20986461-20986494)
chr5 (75-119)||(6814825-6814869)
chr5 (69-133)||(20986555-20986619)
[»] chr2 (12 HSPs)
chr2 (66-244)||(18182493-18182668)
chr2 (66-133)||(18182492-18182559)
chr2 (70-143)||(532166-532239)
chr2 (178-244)||(18182601-18182667)
chr2 (75-143)||(38142318-38142386)
chr2 (70-133)||(1355994-1356060)
chr2 (105-144)||(15562233-15562272)
chr2 (178-236)||(38142328-38142386)
chr2 (105-170)||(39819092-39819155)
chr2 (174-223)||(315408-315457)
chr2 (186-239)||(3094282-3094335)
chr2 (176-208)||(44000883-44000915)
[»] chr4 (13 HSPs)
chr4 (72-244)||(22435348-22435518)
chr4 (65-211)||(35297493-35297640)
chr4 (66-133)||(22435452-22435519)
chr4 (70-133)||(29821322-29821385)
chr4 (186-244)||(35297580-35297638)
chr4 (178-242)||(22435345-22435409)
chr4 (72-123)||(13837842-13837893)
chr4 (74-133)||(18534450-18534509)
chr4 (286-382)||(14337174-14337272)
chr4 (184-244)||(53663895-53663953)
chr4 (177-244)||(31529823-31529890)
chr4 (108-208)||(11392333-11392429)
chr4 (177-227)||(43404603-43404653)
[»] chr8 (9 HSPs)
chr8 (257-369)||(9600564-9600677)
chr8 (65-133)||(3647486-3647554)
chr8 (174-244)||(3647482-3647552)
chr8 (105-208)||(7931551-7931653)
chr8 (418-570)||(15750035-15750187)
chr8 (105-208)||(31470773-31470875)
chr8 (509-560)||(32645024-32645075)
chr8 (105-144)||(43465115-43465154)
chr8 (181-210)||(20697917-20697946)
[»] chr7 (20 HSPs)
chr7 (438-578)||(27909525-27909666)
chr7 (72-204)||(6980892-6981019)
chr7 (76-133)||(17623277-17623334)
chr7 (76-133)||(16648916-16648973)
chr7 (95-222)||(42494791-42494915)
chr7 (70-131)||(16648787-16648848)
chr7 (70-131)||(17623148-17623209)
chr7 (103-170)||(7211964-7212029)
chr7 (186-241)||(6980966-6981021)
chr7 (78-133)||(27385932-27385987)
chr7 (65-123)||(33491172-33491230)
chr7 (75-132)||(42494872-42494929)
chr7 (92-133)||(48583301-48583342)
chr7 (184-244)||(33491174-33491234)
chr7 (78-133)||(6980863-6980918)
chr7 (105-170)||(17272728-17272791)
chr7 (105-208)||(46282897-46283000)
chr7 (177-223)||(48583405-48583451)
chr7 (188-220)||(16648808-16648840)
chr7 (188-220)||(17623169-17623201)
[»] chr3 (15 HSPs)
chr3 (73-150)||(16205706-16205783)
chr3 (70-133)||(26960939-26961002)
chr3 (176-244)||(22616631-22616699)
chr3 (176-239)||(26960937-26961000)
chr3 (105-208)||(29081628-29081730)
chr3 (108-208)||(36738293-36738392)
chr3 (174-223)||(53299825-53299874)
chr3 (178-238)||(16205706-16205766)
chr3 (105-144)||(22893989-22894028)
chr3 (78-133)||(26960815-26960870)
chr3 (174-217)||(26960831-26960874)
chr3 (105-206)||(48342816-48342916)
chr3 (67-133)||(53299829-53299896)
chr3 (108-208)||(32385385-32385484)
chr3 (105-168)||(11512416-11512477)
[»] chr6 (9 HSPs)
chr6 (70-123)||(28606582-28606635)
chr6 (66-133)||(15057116-15057183)
chr6 (174-239)||(7841107-7841172)
chr6 (108-208)||(16193762-16193860)
chr6 (174-244)||(15057112-15057182)
chr6 (174-239)||(28606568-28606633)
chr6 (70-133)||(7837650-7837713)
chr6 (105-149)||(369504-369548)
chr6 (78-133)||(28606449-28606502)
[»] chr1 (7 HSPs)
chr1 (105-208)||(10449475-10449577)
chr1 (72-128)||(11619474-11619530)
chr1 (174-208)||(44291145-44291179)
chr1 (295-344)||(31446892-31446941)
chr1 (105-133)||(44382435-44382463)
chr1 (105-208)||(47557291-47557392)
chr1 (186-218)||(50193999-50194031)
[»] scaffold0001 (1 HSPs)
scaffold0001 (105-209)||(507745-507848)


Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-175; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 12 - 387
Target Start/End: Complemental strand, 5998752 - 5998377
Alignment:
Q  12 cagagatgacaatatgcnnnnnnngatagacaaacttgattttgatatctgattgggtaacacttgggtgacattggggcgccaatgtcatgagacattg 111  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  5998752 cagagatgacaatatgctttttttgatagacaaacttgattttgatatctgattgggtaacatttgggtgacattggggcgccaatgtcatgagatattg 5998653  T
Q  112 gccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttttgtttcctgtacacttctgacattgtggttgaccaatgtcacatg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  5998652 gccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttttgttttttgtacacttctgacattgtggttgaccaatgtcacatg 5998553  T
Q  212 atattgacaccctaatatcgcccaagtgctaccgtgatctcatctatattgaaaaaagagactaatcatccaacaaagaatcaaatgaagtgattccaat 311  Q
    | ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5998552 acattgacaccc-catatcgcccaagtgctaccgtgatctcatctatattgaaaaaagagactaatcatccaacaaagaatcaaatgaagtgattccaat 5998454  T
Q  312 tctgttgaatagtgaagatgaagaagaggaagattttcagaagatgaagaagcaa-tttactagttaggatacaaca 387  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  5998453 tctgttgaatagtgaagatgaagaagaggaagatttttagaagatgaagaagcaattttactagttaggatacaaca 5998377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 421 - 592
Target Start/End: Complemental strand, 5998345 - 5998174
Alignment:
Q  421 tatatattaacaataacatgaagtctccttaacacaaggtgtaccaagaagtcccctaattattacaaactgtcagattacatgaaacaattagccaata 520  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5998345 tatatattaacaacgacatgaagtctccttaacacaaggtgtaccaagaagtcccctaattattacaaactgtcagattacatgaaacaattagccaata 5998246  T
Q  521 cccaaacacaacaaagggtttgaccaccacccagtaaagccataaacaaaattgatgtgaccattatctcac 592  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  5998245 cccaaacacaacaaagggtttgaccaccacccaataaagccataaacaaaattgatgtgactattatatcac 5998174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 34394653 - 34394722
Alignment:
Q  64 ttgggtaacacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    ||||||| || |||||||||||||||| |||||||| ||| |||||||| |||||||||| |||||||||    
T  34394653 ttgggtagcatttgggtgacattggggtgccaatgtgatgtgacattggtcaaccacaatgtcacaagtg 34394722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 34394726 - 34394656
Alignment:
Q  174 tgtacacttctgacattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaagtgctacc 244  Q
    ||||||||| ||||||||||||||||||||||||||| | |||| ||||| ||| || ||||| |||||||    
T  34394726 tgtacacttgtgacattgtggttgaccaatgtcacatcacattggcaccccaatgtcacccaaatgctacc 34394656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 5396425 - 5396371
Alignment:
Q  78 ggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    ||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||    
T  5396425 ggtgacattggggtgccaatgtca-gtgacattggtcaaccacaatatcacaagtg 5396371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 9177971 - 9177935
Alignment:
Q  108 attggccaaccacaatatcacaagtgactttcttctt 144  Q
    |||||||||||||||||||||| ||||||||||||||    
T  9177971 attggccaaccacaatatcacatgtgactttcttctt 9177935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 7137670 - 7137707
Alignment:
Q  105 gacattggccaaccacaatatcacaagtgactttcttc 142  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  7137670 gacattgaccaaccacaatgtcacaagtgactttcttc 7137707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 20986494 - 20986461
Alignment:
Q  177 acacttctgacattgtggttgaccaatgtcacat 210  Q
    |||||| |||||||||||||||||||||||||||    
T  20986494 acacttgtgacattgtggttgaccaatgtcacat 20986461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 6814869 - 6814825
Alignment:
Q  75 ttgggtgacattggggcgccaatgtcatgagacattggccaacca 119  Q
    |||||||||||||||| |||||||||||| ||| |||| ||||||    
T  6814869 ttgggtgacattggggtgccaatgtcatgcgacgttggtcaacca 6814825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 20986619 - 20986555
Alignment:
Q  69 taacacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    |||||||| ||||||||||||  |||||||||||| || |||| ||||| ||||| ||| |||||    
T  20986619 taacactttggtgacattgggatgccaatgtcatgtgatattgaccaactacaatgtcataagtg 20986555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 66 - 244
Target Start/End: Complemental strand, 18182668 - 18182493
Alignment:
Q  66 gggtaacacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattctt 165  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||||||| ||||||||| ||||||||| |||||||||  ||| ||| || |||||| ||    
T  18182668 gggtagcacttgggtgacattggggtgccaatgtcatgtgacattggcaaaccacaatgtcacaagtggctttcttct--ctcgctcaca-aagatt-tt 18182573  T
Q  166 ttgtttcct-gtacacttctgacattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaagtgctacc 244  Q
    ||||||  | |||||||| |||||||||||||| |||||||||||||| |||| ||||| ||| || |||||||||||||    
T  18182572 ttgttttttggtacacttgtgacattgtggttggccaatgtcacatgacattggcaccccaatgtcacccaagtgctacc 18182493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 18182492 - 18182559
Alignment:
Q  66 gggtaacacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||    
T  18182492 gggtagcacttgggtgacattggggtgccaatgtcatgtgacattggccaaccacaatgtcacaagtg 18182559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 532166 - 532239
Alignment:
Q  70 aacacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtgactttcttct 143  Q
    |||||||||||||||| | || |||||||||||| ||||||||||||||||||| | |||||||| ||||||||    
T  532166 aacacttgggtgacatggtggtgccaatgtcatgtgacattggccaaccacaatgtgacaagtgattttcttct 532239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 18182601 - 18182667
Alignment:
Q  178 cacttctgacattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaagtgctacc 244  Q
    ||||| |||||||||||||  |||||||||||||| |||| ||||| ||| || |||||||||||||    
T  18182601 cacttgtgacattgtggtttgccaatgtcacatgacattggcaccccaatgtcacccaagtgctacc 18182667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 38142386 - 38142318
Alignment:
Q  75 ttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtgactttcttct 143  Q
    |||||||||||||||| | | |||||||| |||||||  |||||||||||||| ||||||  |||||||    
T  38142386 ttgggtgacattggggtgtcgatgtcatgtgacattgatcaaccacaatatcagaagtgatcttcttct 38142318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 1356060 - 1355994
Alignment:
Q  70 aacacttgggtgacattggggcgccaatgtcat--ga-gacattggccaaccacaatatcacaagtg 133  Q
    |||| |||||||||||||||| | |||||||||  || ||||||||||||||||||| |||||||||    
T  1356060 aacatttgggtgacattggggtgtcaatgtcatctgacgacattggccaaccacaatgtcacaagtg 1355994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 15562233 - 15562272
Alignment:
Q  105 gacattggccaaccacaatatcacaagtgactttcttctt 144  Q
    ||||||||||||||||||| ||||| ||||||||||||||    
T  15562233 gacattggccaaccacaatgtcacatgtgactttcttctt 15562272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 38142328 - 38142386
Alignment:
Q  178 cacttctgacattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaa 236  Q
    ||||||||| ||||||||||| ||||||||||||| || ||||||| ||| || |||||    
T  38142328 cacttctgatattgtggttgatcaatgtcacatgacatcgacaccccaatgtcacccaa 38142386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 39819092 - 39819155
Alignment:
Q  105 gacattggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttttgtt 170  Q
    ||||||||||||||||||| ||||| ||| ||||||||||  | ||| |||||||||| |||||||    
T  39819092 gacattggccaaccacaatgtcacatgtggctttcttctt--tttctttcacaagatttttttgtt 39819155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 315457 - 315408
Alignment:
Q  174 tgtacacttctgacattgtggttgaccaatgtcacatgatattgacaccc 223  Q
    ||||||||| || ||||||||||||||||||||  |||| ||||||||||    
T  315457 tgtacacttgtggcattgtggttgaccaatgtcgtatgacattgacaccc 315408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 3094282 - 3094335
Alignment:
Q  186 acattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaagtg 239  Q
    ||||||| ||||||||||||||||||| |||||||||  ||| ||||| |||||    
T  3094282 acattgtagttgaccaatgtcacatgacattgacaccacaatgtcgcctaagtg 3094335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 44000883 - 44000915
Alignment:
Q  176 tacacttctgacattgtggttgaccaatgtcac 208  Q
    ||||||| |||||||||||||||||||||||||    
T  44000883 tacacttatgacattgtggttgaccaatgtcac 44000915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 72 - 244
Target Start/End: Original strand, 22435348 - 22435518
Alignment:
Q  72 cacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttt-tgtt 170  Q
    ||||||||||| ||||||| |||||||||||| ||||||||| ||||||||| ||||||||| |||||||||  ||||||| || |||||| ||| | ||    
T  22435348 cacttgggtgatattggggtgccaatgtcatgtgacattggcaaaccacaatgtcacaagtggctttcttct--ctctctcaca-aagattttttgtttt 22435444  T
Q  171 tcctgtacacttctgacattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaagtgctacc 244  Q
    |  ||||||||| ||||||||||||||  ||||||| ||| | |||| ||||| ||| || |||||||||||||    
T  22435445 ttttgtacacttgtgacattgtggttggtcaatgtcgcataacattggcaccccaatgtcacccaagtgctacc 22435518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 65 - 211
Target Start/End: Complemental strand, 35297640 - 35297493
Alignment:
Q  65 tgggtaacacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattct 164  Q
    |||||| ||||||||||| ||||||| | |||||||||| || ||| | |||||||||| | |||||| |||||  |||  |||||||||||||| || |    
T  35297640 tgggtagcacttgggtgatattggggtgtcaatgtcatgtgatattagtcaaccacaatgttacaagtaacttttctctctctctctctcacaaggtttt 35297541  T
Q  165 tttg-tttcctgtacacttctgacattgtggttgaccaatgtcacatg 211  Q
    |||| |||  ||||||||| ||| ||||||||||  ||||||||||||    
T  35297540 tttgtttttttgtacacttgtgatattgtggttggtcaatgtcacatg 35297493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 22435519 - 22435452
Alignment:
Q  66 gggtaacacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    ||||| ||||||||||||||||||| |||||||| ||| ||||||| ||||||||||| |||||||||    
T  22435519 gggtagcacttgggtgacattggggtgccaatgttatgcgacattgaccaaccacaatgtcacaagtg 22435452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 29821322 - 29821385
Alignment:
Q  70 aacacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    ||||||||||||||| ||||| |||||||||||| ||| ||||||||||||||| |||||||||    
T  29821322 aacacttgggtgacaatggggtgccaatgtcatgggaccttggccaaccacaatgtcacaagtg 29821385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 35297580 - 35297638
Alignment:
Q  186 acattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaagtgctacc 244  Q
    |||||||||||||| ||| |||||||| |||||||||| |||||| |||||||||||||    
T  35297580 acattgtggttgactaatatcacatgacattgacaccccaatatcacccaagtgctacc 35297638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 22435409 - 22435345
Alignment:
Q  178 cacttctgacattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaagtgcta 242  Q
    ||||| |||||||||||||  |||||||||||||| |||| ||||| |||||| |||||||||||    
T  22435409 cacttgtgacattgtggtttgccaatgtcacatgacattggcaccccaatatcacccaagtgcta 22435345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 13837842 - 13837893
Alignment:
Q  72 cacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaat 123  Q
    |||||| ||||||||| || |||||||||||| |||||||||||||||||||    
T  13837842 cacttgtgtgacattgtggtgccaatgtcatgtgacattggccaaccacaat 13837893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 18534509 - 18534450
Alignment:
Q  74 cttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    |||| |||||||||||||| |||||||||| ||||||| ||||||| |||||| ||||||    
T  18534509 cttgcgtgacattggggcgtcaatgtcatgtgacattgaccaaccataatatcgcaagtg 18534450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 382
Target Start/End: Complemental strand, 14337272 - 14337174
Alignment:
Q  286 aaagaatcaaatgaagtgattccaattctgttgaatagtgaagatgaagaagaggaag-attttcagaagatgaagaagcaattt-actagttaggata 382  Q
    ||||||||||||||||| |||| |||||  ||| ||||  ||||||||||||| |||| ||| | |||||||||||||| ||||| ||||| |||||||    
T  14337272 aaagaatcaaatgaagtcattctaattcctttggataggaaagatgaagaagacgaagaattataagaagatgaagaagtaatttcactagataggata 14337174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 53663895 - 53663953
Alignment:
Q  184 tgacattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaagtgctacc 244  Q
    |||||||||||||||||||||  |||||||  |||||||| |||||| |||||||||||||    
T  53663895 tgacattgtggttgaccaatgctacatgat--tgacaccccaatatcacccaagtgctacc 53663953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 31529823 - 31529890
Alignment:
Q  177 acacttctgacattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaagtgctacc 244  Q
    |||||| |||||||||||||||||||| |||||||| |||| ||||  ||| || || ||||||||||    
T  31529823 acacttgtgacattgtggttgaccaatatcacatgaaattggcacctcaatgtcaccaaagtgctacc 31529890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 11392333 - 11392429
Alignment:
Q  108 attggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttttgtttcctgtacacttctgacattgtggttgaccaatgtca 207  Q
    ||||||| |||||||| |||||||   |||||||||  |||||| ||||||  || || |||||  ||||||||| |||||||||||||| |||||||||    
T  11392333 attggcctaccacaatgtcacaagg--ctttcttct--ctctctttcacaaagtttttctgttttttgtacacttgtgacattgtggttggccaatgtca 11392428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 43404603 - 43404653
Alignment:
Q  177 acacttctgacattgtggttgaccaatgtcacatgatattgacaccctaat 227  Q
    |||||| ||||||||||||||| |||||||| |||| |||| |||||||||    
T  43404603 acacttgtgacattgtggttgatcaatgtcagatgacattggcaccctaat 43404653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 257 - 369
Target Start/End: Original strand, 9600564 - 9600677
Alignment:
Q  257 atattgaaaaaagagactaatcatccaacaaagaatcaaatgaagtgattccaattctgttgaatagtgaagatgaagaagaggaag-attttcagaaga 355  Q
    ||||||||||||||||  ||||| || | ||||||||||||||||| ||||| |||  |||| ||| |||| ||||||||||||||| ||||  ||||||    
T  9600564 atattgaaaaaagagagcaatcaccctaaaaagaatcaaatgaagtcattccgatttcgttggataatgaatatgaagaagaggaagaatttgaagaaga 9600663  T
Q  356 tgaagaagcaattt 369  Q
    ||||||||||||||    
T  9600664 tgaagaagcaattt 9600677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 3647554 - 3647486
Alignment:
Q  65 tgggtaacacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    |||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||  ||||||||    
T  3647554 tgggtagcacttgggtgacattggggtgccaatgtcatgtgacattggccaaccacaatgacacaagtg 3647486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 3647482 - 3647552
Alignment:
Q  174 tgtacacttctgacattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaagtgctacc 244  Q
    ||||||||| || ||||||||||| |||||||||||||| |||| ||||| ||| || |||||||||||||    
T  3647482 tgtacacttgtgtcattgtggttggccaatgtcacatgacattggcaccccaatgtcacccaagtgctacc 3647552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 7931653 - 7931551
Alignment:
Q  105 gacattggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttttgtttcct-gtacacttctgacattgtggttgaccaat 203  Q
    ||||||||| ||||||||| |||||| || ||||||||||  ||||| ||| || ||| ||||||||| | |||||||| ||||||||||||||  ||||    
T  7931653 gacattggcaaaccacaatgtcacaaatgtctttcttctt--tctctttcataatatttttttgtttctttgtacacttgtgacattgtggttggtcaat 7931556  T
Q  204 gtcac 208  Q
    |||||    
T  7931555 gtcac 7931551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 418 - 570
Target Start/End: Original strand, 15750035 - 15750187
Alignment:
Q  418 tggtatatattaacaataacatgaagtctccttaacacaaggtgtaccaagaagtcccctaattattacaaactgtcaga-ttacatgaaacaattagcc 516  Q
    ||||||||| ||| ||  ||| ||||||||||||| |||||||||||||  |||  | ||||| |||||||| |||||   |||||  || | |||||||    
T  15750035 tggtatataataataacgacaagaagtctccttaa-acaaggtgtaccacaaagaacactaataattacaaaatgtcaacgttacaaaaagcgattagcc 15750133  T
Q  517 aatacccaaacacaacaaagggtttgaccaccacccagtaaagccataaacaaa 570  Q
    |||| ||||||||||||||||| | |||||||||| | |||| | |||||||||    
T  15750134 aatatccaaacacaacaaagggctcgaccaccacctactaaatcaataaacaaa 15750187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 31470773 - 31470875
Alignment:
Q  105 gacattggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttttgtttcct-gtacacttctgacattgtggttgaccaat 203  Q
    ||||||| ||||||||||| ||||||||  | ||||||||  | ||| |||||| ||| ||||||||| | |||||||| |||||||||||||| |||||    
T  31470773 gacattgaccaaccacaatgtcacaagtatcattcttctt--tttctttcacaatatttttttgtttctttgtacacttgtgacattgtggttggccaat 31470870  T
Q  204 gtcac 208  Q
    |||||    
T  31470871 gtcac 31470875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 560
Target Start/End: Complemental strand, 32645075 - 32645024
Alignment:
Q  509 aattagccaatacccaaacacaacaaagggtttgaccaccacccagtaaagc 560  Q
    ||||||| ||| |||||||| |||||||||||||||||||||  ||||||||    
T  32645075 aattagctaatgcccaaacataacaaagggtttgaccaccacgaagtaaagc 32645024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 43465115 - 43465154
Alignment:
Q  105 gacattggccaaccacaatatcacaagtgactttcttctt 144  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  43465115 gacattggccaaccacaatatcacatgtggctttcttctt 43465154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 20697946 - 20697917
Alignment:
Q  181 ttctgacattgtggttgaccaatgtcacat 210  Q
    ||||||||||||||||||||||||||||||    
T  20697946 ttctgacattgtggttgaccaatgtcacat 20697917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 438 - 578
Target Start/End: Complemental strand, 27909666 - 27909525
Alignment:
Q  438 atgaagtctccttaacacaaggtgtaccaagaagtcccctaattattacaaactgtcag-attacatgaaacaattagccaatacccaaacacaacaaag 536  Q
    |||||||||||  | || ||||||||| |||||| |||||||| ||||||| ||||||  ||||||  |||| ||||||||||  ||||||||||||| |    
T  27909666 atgaagtctccaaagcataaggtgtactaagaaggcccctaataattacaacctgtcattattacaaaaaacgattagccaatgtccaaacacaacaatg 27909567  T
Q  537 ggtttgaccaccacccagtaaagccataaacaaaattgatgt 578  Q
     ||||||||||||   | |||||||||||||||| |||||||    
T  27909566 agtttgaccaccatgaactaaagccataaacaaagttgatgt 27909525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 6981019 - 6980892
Alignment:
Q  72 cacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttttgttt 171  Q
    ||||||||||| ||| ||| |||||||||||| ||||||||||||||||||| | ||||||| ||||||      |||||||||||||  | ||||||||    
T  6981019 cacttgggtgaaattagggtgccaatgtcatgtgacattggccaaccacaatgttacaagtggctttct------tctctctcacaaggattttttgttt 6980926  T
Q  172 -cctgtacacttctgacattgtggttgaccaatg 204  Q
       ||||||||| |||||||||||||| ||||||    
T  6980925 gtttgtacacttgtgacattgtggttggccaatg 6980892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 17623334 - 17623277
Alignment:
Q  76 tgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    ||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||    
T  17623334 tgggtgacattggggtgccaatgtcatgtgacattggcaaaccacaatatcacaagtg 17623277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 16648973 - 16648916
Alignment:
Q  76 tgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    ||||||||||||||| |||||||||||| ||||||||| ||||||||| |||||||||    
T  16648973 tgggtgacattggggtgccaatgtcatgtgacattggcaaaccacaatttcacaagtg 16648916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 222
Target Start/End: Original strand, 42494791 - 42494915
Alignment:
Q  95 aatgtcatgagacattggccaaccacaatatcacaagtgactttcttcttcctctctctcacaag-attcttttgtttcctgtacacttctgacattgtg 193  Q
    ||||||||| ||||||||| ||||||||| ||||||||| |||||||||    ||| |||||||| ||| ||   |||  |||| |||| | ||||||||    
T  42494791 aatgtcatgtgacattggcaaaccacaatgtcacaagtggctttcttct----ctcactcacaaggatttttaatttttttgtatacttgtaacattgtg 42494886  T
Q  194 gttgaccaatgtcacatgatattgacacc 222  Q
    ||||||||||||||||||| |||| ||||    
T  42494887 gttgaccaatgtcacatgacattggcacc 42494915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 16648787 - 16648848
Alignment:
Q  70 aacacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaag 131  Q
    |||||||||||||||| |||  | |||||||||| |||||||| ||||||||||||||||||    
T  16648787 aacacttgggtgacatcgggatgtcaatgtcatgtgacattggtcaaccacaatatcacaag 16648848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 17623148 - 17623209
Alignment:
Q  70 aacacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaag 131  Q
    |||||||||||||||| |||  | |||||||||| |||||||| ||||||||||||||||||    
T  17623148 aacacttgggtgacatcgggatgtcaatgtcatgtgacattggtcaaccacaatatcacaag 17623209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 7212029 - 7211964
Alignment:
Q  103 gagacattggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttttgtt 170  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  | ||| |||||||||| |||||||    
T  7212029 gagacattggccaaccacaatgtcacatgtgactttcttctt--tttctttcacaagatttttttgtt 7211964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 6980966 - 6981021
Alignment:
Q  186 acattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaagtgct 241  Q
    |||||||||||| |||||||||||||| |||| ||||||||| || ||||||||||    
T  6980966 acattgtggttggccaatgtcacatgacattggcaccctaatttcacccaagtgct 6981021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 27385987 - 27385932
Alignment:
Q  78 ggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    |||||||||| || |||||||||||| ||| ||||||||||||||| |||||||||    
T  27385987 ggtgacattgaggtgccaatgtcatgtgacgttggccaaccacaatgtcacaagtg 27385932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 33491172 - 33491230
Alignment:
Q  65 tgggtaacacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaat 123  Q
    |||||| ||||| | ||| ||||||| |||||||||||| |||||||||||||||||||    
T  33491172 tgggtagcactttgatgatattggggtgccaatgtcatgtgacattggccaaccacaat 33491230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 42494929 - 42494872
Alignment:
Q  75 ttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagt 132  Q
    ||||||||||||| || |||||||||||| |||||||| |||||||||| | ||||||    
T  42494929 ttgggtgacattgtggtgccaatgtcatgtgacattggtcaaccacaatgttacaagt 42494872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 48583301 - 48583342
Alignment:
Q  92 gccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  48583301 gccaatgtcatgtgacattggccaaccacaatataacaagtg 48583342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 33491234 - 33491174
Alignment:
Q  184 tgacattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaagtgctacc 244  Q
    |||||||||||||| |||||||||||||| |||| ||||| ||||||  | ||||||||||    
T  33491234 tgacattgtggttggccaatgtcacatgacattggcaccccaatatcatcaaagtgctacc 33491174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 6980863 - 6980918
Alignment:
Q  78 ggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    ||||||||||||| ||||||||||   | ||||||||||||||||| |||||||||    
T  6980863 ggtgacattggggtgccaatgtcacatgtcattggccaaccacaatgtcacaagtg 6980918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 17272728 - 17272791
Alignment:
Q  105 gacattggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttttgtt 170  Q
    ||||||||||||||||||| ||||| ||| ||||||||||  | ||| |||||||||| |||||||    
T  17272728 gacattggccaaccacaatgtcacatgtggctttcttctt--tttctttcacaagatttttttgtt 17272791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 46282897 - 46283000
Alignment:
Q  105 gacattggccaaccacaatatcacaagt-gactttcttcttcctctctctcacaag-attcttttgtttcctgtacacttctgacattgtggttgaccaa 202  Q
    |||||||||||||||||||||||||||| |  |||||||||  ||||| ||||||| ||| ||||||||  ||||||  | | ||||||||||||  |||    
T  46282897 gacattggccaaccacaatatcacaagtggtttttcttctt--tctctttcacaagaatttttttgttttttgtacaactattacattgtggttggtcaa 46282994  T
Q  203 tgtcac 208  Q
    ||||||    
T  46282995 tgtcac 46283000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 48583405 - 48583451
Alignment:
Q  177 acacttctgacattgtggttgaccaatgtcacatgatattgacaccc 223  Q
    |||||| | ||||||||||||||||||||||||||| |||| |||||    
T  48583405 acacttgtcacattgtggttgaccaatgtcacatgacattggcaccc 48583451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 16648840 - 16648808
Alignment:
Q  188 attgtggttgaccaatgtcacatgatattgaca 220  Q
    ||||||||||||||||||||||||| |||||||    
T  16648840 attgtggttgaccaatgtcacatgacattgaca 16648808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 17623201 - 17623169
Alignment:
Q  188 attgtggttgaccaatgtcacatgatattgaca 220  Q
    ||||||||||||||||||||||||| |||||||    
T  17623201 attgtggttgaccaatgtcacatgacattgaca 17623169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 16205706 - 16205783
Alignment:
Q  73 acttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtgactttcttcttcctctc 150  Q
    |||||||||||||||||| |||||||||||| |||||||  |||||||||| ||||||||| |||||||||| |||||    
T  16205706 acttgggtgacattggggtgccaatgtcatgtgacattgatcaaccacaatgtcacaagtggctttcttcttactctc 16205783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 26961002 - 26960939
Alignment:
Q  70 aacacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    |||||||||||||||||| || | |||||||||| ||||||||||||||||||| |||||||||    
T  26961002 aacacttgggtgacattgaggtgtcaatgtcatgtgacattggccaaccacaatgtcacaagtg 26960939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 22616631 - 22616699
Alignment:
Q  176 tacacttctgacattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaagtgctacc 244  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| |||  | | || |||||||||||||    
T  22616631 tacacttctgacattgtggttgatcaatgtcacatgacattgatacctcagtgtcacccaagtgctacc 22616699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 26960937 - 26961000
Alignment:
Q  176 tacacttctgacattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaagtg 239  Q
    ||||||| |||||||||||||| |||||||||||||| |||||||||  ||| || ||||||||    
T  26960937 tacacttgtgacattgtggttggccaatgtcacatgacattgacacctcaatgtcacccaagtg 26961000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 29081628 - 29081730
Alignment:
Q  105 gacattggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttttgtttcctgtacacttctgacattgtggttgaccaatg 204  Q
    ||||||| ||||||||||| ||||||||  |||||||||| || | ||  | ||| || |||| |||  ||||||||| |||||||||||||||||||||    
T  29081628 gacattgaccaaccacaatgtcacaagtagctttcttctttctttttcata-aagtttttttttttttttgtacacttgtgacattgtggttgaccaatg 29081726  T
Q  205 tcac 208  Q
    ||||    
T  29081727 tcac 29081730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 36738293 - 36738392
Alignment:
Q  108 attggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttttgttt-cctgtacacttctgacattgtggttgaccaatgtc 206  Q
    ||||| |||||||||||||||||||| ||||||||||  ||| | |||||| ||| ||||||||   | ||||||| ||| ||||| |||||||||||||    
T  36738293 attggtcaaccacaatatcacaagtgtctttcttctt--tctttttcacaatatttttttgtttatttatacacttatgatattgtagttgaccaatgtc 36738390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 53299825 - 53299874
Alignment:
Q  174 tgtacacttctgacattgtggttgaccaatgtcacatgatattgacaccc 223  Q
    ||||||||| |||||||||||||| |||||||||| ||| ||||||||||    
T  53299825 tgtacacttgtgacattgtggttggccaatgtcacgtgacattgacaccc 53299874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 16205766 - 16205706
Alignment:
Q  178 cacttctgacattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaagt 238  Q
    ||||| ||||||||||||||| ||||||||||||| |||| ||||| ||| || |||||||    
T  16205766 cacttgtgacattgtggttgatcaatgtcacatgacattggcaccccaatgtcacccaagt 16205706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 22894028 - 22893989
Alignment:
Q  105 gacattggccaaccacaatatcacaagtgactttcttctt 144  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  22894028 gacattgaccaaccacaatgtcacaagtgactttcttctt 22893989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 26960815 - 26960870
Alignment:
Q  78 ggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    |||||||||||||  ||||| ||||| |||||| |||||||||||| |||||||||    
T  26960815 ggtgacattggggtaccaatatcatgtgacattagccaaccacaatgtcacaagtg 26960870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 26960874 - 26960831
Alignment:
Q  174 tgtacacttctgacattgtggttgaccaatgtcacatgatattg 217  Q
    ||||||||| |||||||||||||| | |||||||||||||||||    
T  26960874 tgtacacttgtgacattgtggttggctaatgtcacatgatattg 26960831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 206
Target Start/End: Complemental strand, 48342916 - 48342816
Alignment:
Q  105 gacattggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttttgtttcct-gtacacttctgacattgtggttgaccaat 203  Q
    |||||| |||||| ||||| ||||| ||| |||||||| |  ||||| | |||| ||| ||||||||| | ||||| || ||||||||||||||||||||    
T  48342916 gacattagccaacgacaatgtcacatgtgtctttcttcat--tctcttttacaatatttttttgtttctttgtacatttgtgacattgtggttgaccaat 48342819  T
Q  204 gtc 206  Q
    |||    
T  48342818 gtc 48342816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 53299896 - 53299829
Alignment:
Q  67 ggtaacacttgggtgacattggggc-gccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    |||| ||||| |||||||||||||  | |||||||| | ||||||||||||||||||| |||||||||    
T  53299896 ggtagcactttggtgacattgggggtgtcaatgtcacgtgacattggccaaccacaatgtcacaagtg 53299829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 32385484 - 32385385
Alignment:
Q  108 attggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttttgtttcct-gtacacttctgacattgtggttgaccaatgtc 206  Q
    |||||||||||||||| | | |||||  |||||||||  ||||| |||||| |||  |||||||  | |||||||| | |||||||||||||||||||||    
T  32385484 attggccaaccacaatgttaaaagtgtttttcttctt--tctctttcacaatatttatttgtttatttgtacacttgtcacattgtggttgaccaatgtc 32385387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 11512416 - 11512477
Alignment:
Q  105 gacattggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttttg 168  Q
    ||||||||||||||||||| ||||| ||| ||||||||||  | ||| |||||||||| |||||    
T  11512416 gacattggccaaccacaatgtcacatgtggctttcttctt--tttctttcacaagatttttttg 11512477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 28606635 - 28606582
Alignment:
Q  70 aacacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaat 123  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  28606635 aacacttgggtgacattggggtgccaatgtcatgtgacattggccaaccacaat 28606582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 15057183 - 15057116
Alignment:
Q  66 gggtaacacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    ||||| ||||| ||||||||||||| | |||||||||| ||||||||||||||| |||||||||||||    
T  15057183 gggtagcactttggtgacattggggtgtcaatgtcatgtgacattggccaaccaaaatatcacaagtg 15057116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 7841107 - 7841172
Alignment:
Q  174 tgtacacttctgacattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaagtg 239  Q
    ||||||| | |||||||||||||||| |||||||||| | |||||||||| ||| |||||||||||    
T  7841107 tgtacacatgtgacattgtggttgacaaatgtcacataacattgacaccccaatgtcgcccaagtg 7841172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 16193762 - 16193860
Alignment:
Q  108 attggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttttgtttcctgtacacttctgacattgtggttgaccaatgtca 207  Q
    ||||||||| |||||| ||||||||| ||||||||||  ||||  |||||| ||| ||||   |  ||||||||| ||||||||||||||||||||||||    
T  16193762 attggccaatcacaatgtcacaagtgtctttcttctt--tctccttcacaatattttttttagttttgtacacttgtgacattgtggttgaccaatgtca 16193859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 15057112 - 15057182
Alignment:
Q  174 tgtacacttctgacattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaagtgctacc 244  Q
    ||||||||| ||| ||| |||||| |||||||||||||| |||||||||| ||| || || ||||||||||    
T  15057112 tgtacacttgtgatattttggttggccaatgtcacatgacattgacaccccaatgtcaccaaagtgctacc 15057182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 28606568 - 28606633
Alignment:
Q  174 tgtacacttctgacattgtggttgaccaatgtcacatgatattgacaccctaatatcgcccaagtg 239  Q
    |||||||||  ||||||||||||| |||||||||||||| |||| ||||| ||| || ||||||||    
T  28606568 tgtacacttaagacattgtggttggccaatgtcacatgacattggcaccccaatgtcacccaagtg 28606633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 7837650 - 7837713
Alignment:
Q  70 aacacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    ||||||||||||||||||  | |||||||||||| || |||||||||| ||||| | |||||||    
T  7837650 aacacttgggtgacattgaagtgccaatgtcatgtgatattggccaactacaatgttacaagtg 7837713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 369548 - 369504
Alignment:
Q  105 gacattggccaaccacaatatcacaagtgactttcttcttcctct 149  Q
    ||||||| ||||||||||| ||||||||| |||||||||| ||||    
T  369548 gacattgaccaaccacaatgtcacaagtgtctttcttctttctct 369504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 28606449 - 28606502
Alignment:
Q  78 ggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcacaagtg 133  Q
    ||||||||||||| |||||||| ||| |||  |||||||||||||| |||||||||    
T  28606449 ggtgacattggggtgccaatgttatgtgac--tggccaaccacaatgtcacaagtg 28606502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 10449577 - 10449475
Alignment:
Q  105 gacattggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttttgtttcct-gtacacttctgacattgtggttgaccaat 203  Q
    |||||||| |||||||||| |||||| |  ||||||||||  ||||| |||||| ||| ||||||||| | |||||||| ||||||||||||||  ||||    
T  10449577 gacattggtcaaccacaatgtcacaaatatctttcttctt--tctctttcacaatatttttttgtttctttgtacacttgtgacattgtggttggtcaat 10449480  T
Q  204 gtcac 208  Q
    |||||    
T  10449479 gtcac 10449475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 11619474 - 11619530
Alignment:
Q  72 cacttgggtgacattggggcgccaatgtcatgagacattggccaaccacaatatcac 128  Q
    |||||| |||||||||||  |||||||||||| ||||||||| ||||||||| ||||    
T  11619474 cacttgagtgacattgggttgccaatgtcatgcgacattggcaaaccacaatgtcac 11619530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 44291145 - 44291179
Alignment:
Q  174 tgtacacttctgacattgtggttgaccaatgtcac 208  Q
    ||||||||| |||||||||||||||||||||||||    
T  44291145 tgtacacttgtgacattgtggttgaccaatgtcac 44291179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 31446892 - 31446941
Alignment:
Q  295 aatgaagtgattccaattctgttgaatagtgaagatgaagaagaggaaga 344  Q
    |||||||| |||||||||||  || |||||||||||||||| ||||||||    
T  31446892 aatgaagtcattccaattcttatggatagtgaagatgaagaggaggaaga 31446941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 44382463 - 44382435
Alignment:
Q  105 gacattggccaaccacaatatcacaagtg 133  Q
    |||||||||||||||||||||||||||||    
T  44382463 gacattggccaaccacaatatcacaagtg 44382435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 47557291 - 47557392
Alignment:
Q  105 gacattggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttttgtttcctgtacacttctgacattgtggttgaccaatg 204  Q
    ||||||| ||||||||||| | |||||||||||| || ||  ||||| ||| |||||  |||||| |  |||||||||  || ||||||||||| |||||    
T  47557291 gacattgtccaaccacaatgttacaagtgacttttttttt--tctctttcataagatatttttgtattatgtacacttgcgatattgtggttgatcaatg 47557388  T
Q  205 tcac 208  Q
    ||||    
T  47557389 tcac 47557392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 50193999 - 50194031
Alignment:
Q  186 acattgtggttgaccaatgtcacatgatattga 218  Q
    ||||||||||||||||||||||||||| |||||    
T  50193999 acattgtggttgaccaatgtcacatgaaattga 50194031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 209
Target Start/End: Original strand, 507745 - 507848
Alignment:
Q  105 gacattggccaaccacaatatcacaagtgactttcttcttcctctctctcacaagattcttttgtttcct-gtacacttctgacattgtggttgaccaat 203  Q
    ||||||| |||| |||||||| |||||||  |||||||||  ||||| |||||||||| |||| || | | ||| |||| |||||||||||| |||||||    
T  507745 gacattgaccaatcacaatattacaagtggatttcttctt--tctctttcacaagatttttttattgctttgtatacttatgacattgtggtcgaccaat 507842  T
Q  204 gtcaca 209  Q
    ||||||    
T  507843 gtcaca 507848  T

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