View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17315_low_32 (Length: 236)
Name: NF17315_low_32
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_low_32 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 5509168 - 5509388
Alignment:
| Q |
16 |
ctttgaacaatgaagaccttaacatggtctctagcaacattttatcagctgaaacttggcttaggttaaacattttcccatattacccttcatcaaaaat |
115 |
Q |
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| T |
5509168 |
ctttgaacaatgaagaccttaacatggtctctagcaacattttatcagctgaaacttggcttaggttaaacattttcccatattacccttcatcaaaaat |
5509267 |
T |
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| Q |
116 |
caccaacattgttgggaaaacctcaactttctgccaacaagaccaaaacaaccttaatgttgttctgtcttctttgaaaaatctctatcattcccttaaa |
215 |
Q |
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| T |
5509268 |
caccaacattgttgggaaaacctcaactttctgccaacaagaccaaaacaaccttaatgttgttctgtcttctttgaaaaatctctatcattcccttaaa |
5509367 |
T |
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| Q |
216 |
agatggggtttagaacaagac |
236 |
Q |
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| T |
5509368 |
agatggggtttagaacaagac |
5509388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 236
Target Start/End: Original strand, 20444686 - 20444894
Alignment:
| Q |
29 |
agaccttaacatggtctctagcaacattttatcagctgaaacttggcttaggttaaacattttcccatattacccttcatcaaaaatcaccaacattgtt |
128 |
Q |
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| T |
20444686 |
agaccgtaacaaggtctctagcaacattttatcagctgaaacttggcttaggttaaacattttctcataa-----------aaaaaaaaccaagattgtt |
20444774 |
T |
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| Q |
129 |
gggaaaacctcaactttctgccaacaagaccaaaac---aacc---------ttaatgttgttctgtcttctttgaaaaatctctatcattcccttaaaa |
216 |
Q |
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| T |
20444775 |
ggaaaaacctcaactttctgccaacaagaccaaaaccaaaaccaaaacaaatttaatgttgttctgtcttctttgaaaaatctctatcattccctcaaaa |
20444874 |
T |
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| Q |
217 |
gatggggtttagaacaagac |
236 |
Q |
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| T |
20444875 |
gatggggtttagaacaagac |
20444894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 20432616 - 20432691
Alignment:
| Q |
160 |
aaaacaaccttaatgttgttctgtcttctttgaaaaatctctatcattcccttaaaagatggggtttagaacaaga |
235 |
Q |
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| T |
20432616 |
aaaacaaccttaatgttgttctgtcttctttgaaaaatctctatcattccctcaaaagatggggtttagaacaaga |
20432691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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